Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4 123 6e-23 seq15 102 2e-16 seq138 89.7 1e-12 >seq4 Length=3596895 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||| ||||| |||||||| || || || || | || Sbjct 3260854 AAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCAGATACCATTGAGAAC 3260913 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| ||| || || ||| | || |||||| Sbjct 3260914 GTTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCACCAGATCAACAACGTCTGATCTTC 3260973 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||||||||||| || | || || ||||||| ||| |||||||||||||| Sbjct 3260974 GCCGGTAAGCAGTTGGAAGACGGTCGCACCCTGTCCGATTATAACATCCAGAAAGAGTCT 3261033 Query 206365 ACTCTTCACCTTGTTTTG 206382 ||||||||| | || ||| Sbjct 3261034 ACTCTTCACTTGGTATTG 3261051 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||| ||||| |||||||| || || || || | || Sbjct 3260096 AAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCAGATACCATTGAGAAC 3260155 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || |||||| || || ||| | | |||||| Sbjct 3260156 GTTAAGGCTAAGATCCAAGATAAGGAGGGAATTCCACCAGATCAACAACGTTTGATCTTC 3260215 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||||||||||| ||| | || || ||||||| ||| |||||||||||||| Sbjct 3260216 GCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGATTATAACATCCAGAAAGAGTCT 3260275 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| | || ||| | || || Sbjct 3260276 ACTCTTCACTTGGTATTGCGTCTCCG 3260301 Score = 105 bits (116), Expect = 2e-17 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || || || |||||| |||| || ||| || || || | ||| || ||||| Sbjct 3259193 ACTGGCAAGACCATCACTCTGGAGGTTGAACCATCCGATACTATTGAAAATGTTAAAGCT 3259252 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||||||||| ||||||||||| || || ||| | | ||||| ||||| || Sbjct 3259253 AA-GATTCAAGACAAAGAAGGAATCCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAA 3259311 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| ||||||| ||| | || ||| ||||||||||| ||||||| |||||||| ||||| Sbjct 3259312 GCAACTGGAAGACGGACGCACCTTGTCCGATTACAACATCCAGAAGGAGTCTACACTTCA 3259371 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||| || ||||||||||| || || |||||| | || Sbjct 3261310 AAGACACTCACCGGCAAAACTATTACTTTGGAAGTTGAGCCATCGGACACAATTGAGAAT 3261369 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||||||||| || || || ||| || || ||| | || |||||| Sbjct 3261370 GTAAAGGCTAAGATTCAAGATAAGGAGGGCATTCCACCAGATCAACAACGTCTGATCTTC 3261429 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| | || |||||| | |||||| |||| ||||| | ||||| || || Sbjct 3261430 GCCGGTAAGCAACTCGAGGATGGACGAACTTTGTCCGACTACAATATACAGAAGGAATCG 3261489 Query 206365 ACTCTTCA 206372 || || || Sbjct 3261490 ACACTCCA 3261497 Score = 96.9 bits (106), Expect = 8e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || ||| |||| || ||| ||| || ||| | ||| Sbjct 3259640 AAAACATTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCCGATACAATTGAAAAC 3259699 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| ||||| || || || || ||| || || ||| | || ||||| Sbjct 3259700 GTTAAAGCCAAA-ATTCAGGACAAGGAGGGTATTCCTCCAGATCAACAACGTCTGATCTT 3259758 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| ||||| ||||| || ||| | || ||| |||| |||||| ||||||| || || Sbjct 3259759 CGCCGGTAAGCAATTGGAGGACGGACGTACCTTGTCCGACTACAACATCCAGAAGGAATC 3259818 Query 206364 TACTCTTCAC 206373 || || ||| Sbjct 3259819 AACCCTCCAC 3259828 Score = 95.1 bits (104), Expect = 3e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 204760 CAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATC 204819 ||| || | ||||||||||||||||||||||| ||||| || | || || | || || Sbjct 3261051 CAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGACCGTC 3260992 Query 204820 TTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||| |||||| ||||||||||| || ||||||||| Sbjct 3260991 TTCCAACTGCTTACCGGCGAAGATCAGACGTTGTTGA 3260955 Score = 95.1 bits (104), Expect = 3e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||| ||||| |||||||| ||| || ||||| | ||| Sbjct 3261082 AAGACCCTCACCGGCAAAACCATCACCTTGGAAGTTGAACCATCCGACACCATAGAAAAT 3261141 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || || ||||| ||| || || ||| | | ||||| Sbjct 3261142 GTCAAAGCCAA-GATCCAGGATAAGGAAGGCATTCCCCCAGATCAACAACGTTTGATCTT 3261200 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| ||||| ||||| || ||| | || || | || |||||| | || || || || Sbjct 3261201 CGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCAGACTACAACATTCAAAAGGAATC 3261260 Query 206364 TACTCTTCACCTTGTTTTG 206382 ||||||||| | || ||| Sbjct 3261261 AACTCTTCACTTGGTATTG 3261279 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| || | ||||||||||||||||||||||| ||||| || | || || Sbjct 3260301 CGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTG 3260242 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||| ||||||| ||| || ||||||||||| | ||||||||| Sbjct 3260241 CGTCCGTCTTCCAACTGTTTGCCGGCGAAGATCAAACGTTGTTGA 3260197 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || |||||||| ||||||||||| || || ||| || Sbjct 3259400 CAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCCGAT 3259459 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| |||||||| || |||||||| || || || Sbjct 3259460 ACTATTGAGAATGTCAAAGCTAAA-ATTCAAGATAAGGAAGGAATCCCCCCAGATCAACA 3259518 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || ||||| || || |||||||| |||||| | || || ||||||| || | Sbjct 3259519 ACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGATTATAATAT 3259578 Query 206352 CCAGAAAGAGTCTACT 206367 ||||| || || ||| Sbjct 3259579 TCAGAAGGAATCCACT 3259594 >seq15 Length=2140121 Score = 102 bits (112), Expect = 2e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || || || || ||||| || || || || ||||||| Sbjct 600441 CAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTCTGAC 600382 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| ||| || ||||| ||||| || || || ||| || Sbjct 600381 ACCATCGAAAATGTCAAAGCTAAA-ATCCAAGACAAAGAGGGTATCCCCCCAGACCAACA 600323 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | |||||||||||||| || || |||||||| | || ||| |||| |||||| | Sbjct 600322 GCGTTTGATCTTCGCCGGAAAACAATTAGAAGATGGTCGCACCTTGTCCGACTACAACAT 600263 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||||| || || ||| | ||| || | |||||| Sbjct 600262 TCAAAAGGAGTCAACACTCCACTTGGTTCTGCGTCTTCGA 600223 >seq138 Length=433312 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| | || || ||| ||| || || | ||| Sbjct 21544 AAAACCCTTACGGGCAAGACCATCACTCTTGAGGTTGAACCTTCGGATACTATTGAACAT 21603 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| || ||||| ||| ||| || || | || || || Sbjct 21604 GTTAAGGCCAAAATTCAAGATAAGGAAGGTATTCCGCCAGATCAACAGCGTCTAATTTTT 21663 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| |||||||| ||||| | || ||||| || || || | |||||||||||| Sbjct 21664 GCCGGAAAACAGTTGGAGGATGGTCGCACATTGGCTGACTATAATATTCAGAAAGAGTCT 21723 Query 206365 AC 206366 || Sbjct 21724 AC 21725 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 204776 GTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 204835 |||||||||||||| | ||||||||||||||| || | ||||| |||| ||| |||||| Sbjct 21725 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCCTCCAACTGTTTTCCG 21666 Query 204836 GCGAAGATAAGCCGTTGTTGA 204856 || || || || || |||||| Sbjct 21665 GCAAAAATTAGACGCTGTTGA 21645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181272687024358