Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4 114 1e-20 seq15 96.9 3e-15 seq385 93.3 4e-14 >seq4 Length=3596895 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| |||||| || |||| |||| |||||||| || || Sbjct 3259815 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCCAATTGCTTACCGGCGAAG 3259756 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || || || || | ||||| | |||||||||| ||| ||| |||| | ||| Sbjct 3259755 ATCAGACGTTGTTGATCTGGAGGAATACCCTCCTTGTCC-TGAATTTTGGCTTTAACGTT 3259697 Query 35666 GCCACC-GTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 || || ||| | ||| ||||||| || || |||||||||||||| ||||| || Sbjct 3259696 TTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTTTTACCCGTCAATGTTTTAAC 3259637 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 3259636 GAAGATTTGCAT 3259625 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | | |||||||| | ||| |||||| || ||||||||||||| | Sbjct 3259395 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 3259336 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| ||||| |||||||| ||||| || || || || || || | || Sbjct 3259335 AAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGG 3259276 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || ||||| ||||| || | | || | | || ||| | ||| ||| Sbjct 3259275 ATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACC 3259216 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 |||| ||||| || || || ||||| || ||||| || || |||||| || Sbjct 3259215 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 3259165 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | ||| ||||| || | || ||||||||||||||||| || | | Sbjct 3261293 CCACCACGCAAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGAC 3261234 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| |||| |||||||| || || ||||| || || || || | ||| Sbjct 3261233 AGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGA 3261174 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| ||| |||||| || | | || | | |||||| | ||| || Sbjct 3261173 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACT 3261114 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| ||||| || || | || ||||| || || ||||| Sbjct 3261113 TCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | | || |||||||| || ||||| ||||| || ||||||| | Sbjct 3259623 CCACCACGCAAGCGTAGAACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGAC 3259564 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| ||| || || || || ||||| || || || || | || Sbjct 3259563 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 3259504 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| || ||| ||| |||| | | | | | || ||| | || || Sbjct 3259503 ATTCCTTCCTTATCT-TGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAAC 3259445 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| ||||| |||||||||||||| || || |||||||| Sbjct 3259444 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 3259397 >seq15 Length=2140121 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| |||| |||||| || | || || | || || || || || Sbjct 600253 CTCCTTTTGAATGTTGTAGTCGGACAAGGTGCGACCATCTTCTAATTGTTTTCCGGCGAA 600312 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 ||||| ||||| ||||| | || | | ||| ||||| ||| ||| || || | | Sbjct 600313 GATCAAACGCTGTTGGTCTGGGGGGATACCCTCTTTGTCTTGGAT-TTTAGCTTTGACAT 600371 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| | || ||||| | ||||| || ||||| || || ||||| | Sbjct 600372 TTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGA 600431 Query 35724 CAAATATCTGCATTCTG 35740 | || |||||||||||| Sbjct 600432 CGAAAATCTGCATTCTG 600448 >seq385 Length=177728 Score = 93.3 bits (102), Expect = 4e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 44133 TGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGTATG 44192 ||||| || ||||||| ||| ||||||| ||||| ||||||||| || | |||| | Sbjct 114438 TGGAATGCAGCCCAAATACAGTTGTTGCGTGAAGGCAAAATGCACGCATTTCTTCGTAAG 114379 Query 44193 TATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCGCGCTCGTTCATGCC 44252 |||||| || |||||| |||| ||||| | | || ||||| | |||| Sbjct 114378 TATTGGGCAAAAAAGATACTGGAATGGTCCAACTCACCAGAAGAGGCGCTAGAAACTGCC 114319 Query 44253 ATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGG 44308 || ||| | || |||||||||||||| ||||| | || ||||| || || || || Sbjct 114318 ATTTATTTAAATGACAAGTACAGTTTAGACGGCAGAGATCCCAAAGGTTATGTGGG 114263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450589627165840