Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq15 132 5e-26 seq4 131 2e-25 seq138 125 7e-24 seq11 118 1e-21 >seq15 Length=2140121 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||| || | ||| || || || ||||||||||||||||||||| Sbjct 600218 CCACCTCGAAGACGCAGAACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAC 600277 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || | ||||| || || || ||||||||||| || || || || Sbjct 600278 AAGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGG 600337 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| ||||| ||||| |||||| || | ||||| || | || || Sbjct 600338 ATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACC 600397 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | || ||||| ||||| ||||| ||||| |||||||| |||||| || Sbjct 600398 TCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTCTG 600448 >seq4 Length=3596895 Score = 131 bits (144), Expect = 2e-25 Identities = 153/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG--TCGTCGAGCT 134568 |||| ||||||||||| ||||| || || ||| || ||||| | || || | || Sbjct 3259599 TGTAAAGTGGATTCCTTCTGAATATTATAATCGG--ACAGTGTGCGTCCATCCTCCAACT 3259542 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 ||||||| || ||||||||||| || ||||| || || || ||||| || |||||||||| Sbjct 3259541 GTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTT 3259482 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 | |||||| || | || ||||| | || || || | ||| |||||||| || | Sbjct 3259481 TAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCG 3259422 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 | |||||||| |||||||| ||||| Sbjct 3259421 TCAAAGTTTTGACGAAAATCTGCAT 3259397 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 ||||| || | ||| || || ||||||||||||||||||||||| | |||| | | Sbjct 3261281 CGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGGGTGCGTCCG 3261222 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | || || || || || |||||||| || ||||| || || |||||||| || Sbjct 3261221 TCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCCTTA 3261162 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || || || |||||| || | |||||||| | ||| || || | || ||| Sbjct 3261161 TCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATG 3261102 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| | || || |||||||||||||| Sbjct 3261101 GTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || |||||||| || |||||||||||| | ||| | ||| || | || Sbjct 3259828 GTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCCAATTG 3259769 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || |||| ||| || ||||| || || || || || || || |||||||| Sbjct 3259768 CTTACCGGCGAAGATCAGACGTTGTTGATCTGGAGGAATACCCTCCTTGTCCTGAATTTT 3259709 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | ||| ||||| | ||| || || |||||||| |||||||| || Sbjct 3259708 GGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTTTTACCCGT 3259649 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || ||||||||||| |||||||| Sbjct 3259648 CAATGTTTTAACGAAGATTTGCAT 3259625 Score = 116 bits (128), Expect = 4e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || ||||| || |||||||| ||| | |||| | ||| || || || Sbjct 3259371 TGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCCAGTTGC 3259312 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || ||||| || ||||| || || || |||||||| |||||||| || Sbjct 3259311 TTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGAATCTTA 3259252 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | || ||||| | ||| || || ||||| ||||| || || || Sbjct 3259251 GCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTGCCAGTC 3259192 Query 134691 AAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| |||||||||||| Sbjct 3259191 AAGGTCTTCACGAAGATTTGCATTTTG 3259165 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||| | || || || |||||||| || || ||||||||| Sbjct 3261521 CCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGAC 3261462 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || ||||| || || || || || |||| ||| || ||||| || || Sbjct 3261461 AAAGTTCGTCCATCCTCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGA 3261402 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || |||||||| || || || || | |||||| || | || || Sbjct 3261401 ATGCCCTCCTTATCTTGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAACT 3261342 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | |||||| ||||| ||||| | || || |||||||||||||| Sbjct 3261341 TCCAAAGTAATAGTTTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 3261295 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/207 (70%), Gaps = 14/207 (7%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCT- 134568 ||| || || |||||||| || |||||||||||| | ||||||| | || Sbjct 3260545 GTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACA---------AGTCGTCCATCTC 3260495 Query 134569 --GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||||||| || || ||||| || || ||||| || || | || || || ||||| || Sbjct 3260494 CAGTTTGCCGGCGAAGATCAA-CGTTGTTGATCTGGTGGGAATCCCTCCTTATCTTGGAT 3260436 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 || |||||| || | |||||||| | ||| || || | || ||||||||||| Sbjct 3260435 CTTGGCTTTGACATT-TCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATGGTTTTACC 3260377 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| | || || || ||||||||||| Sbjct 3260376 GGTGAGGGTCTTCACAAAAATTTGCAT 3260350 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || |||||||| |||||||||||||| | |||| | ||| || | || Sbjct 3260056 GTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCCTCCAATTG 3259997 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || |||||||| || ||||| || || || || || || ||||| || || Sbjct 3259996 CTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCTTGGATCTT 3259937 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | || || || | || || || | |||||| ||||| || || Sbjct 3259936 AGCCTTAACGTTCTCAATGGTATCTGAAGGCTCTACTTCCAAAGTAATAGTTTTGCCAGT 3259877 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 3259876 CAGGGTCTTCACGAAGATTTGCAT 3259853 >seq138 Length=433312 Score = 125 bits (138), Expect = 7e-24 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || || | || | |||| ||| || || || ||||| || ||||| ||| Sbjct 21755 CCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCC 21696 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | || || || || | |||||| || |||||||| | |||||| ||||| ||||| Sbjct 21695 AATG-TGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGG 21637 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCA 134664 || ||||| || ||||||||||| || || || |||| || || || | ||| | Sbjct 21636 AATACCTTCCTTATCTTGAATTTTGGCCTTAACAT-GTTCAATAGTATCCGAAGGTTCAA 21578 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || ||||| ||||| || || || | ||||| ||||||||||||||| Sbjct 21577 CCTCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCATT 21528 >seq11 Length=2963766 Score = 118 bits (130), Expect = 1e-21 Identities = 862/1378 (63%), Gaps = 34/1378 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | ||||||| || | || || || || ||||| || || || || | Sbjct 1981461 CAGCATATGTTAATGCGCGTTGCCATCGGTATACATGGTGAAGATATCGATGCAGCAATT 1981520 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 ||||| ||| | || | || | | ||||| || |||||||| || | || || Sbjct 1981521 GAAACATACAACTTGCTTTCCGAGCGTTATTTTACACATGCTTCGCCGACACTCTTCGCT 1981580 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || | ||| || ||| |||||||| || || || || || |||||| || || | Sbjct 1981581 GCTGCCACCAAACAGCCGCAATTGTCATCATGCTTCTTACTTACCATGGTGGACGATTCC 1981640 Query 7744 ATCGACGGCATTTACAACACGCTGCGCG--ATTGCGCCAATATTTCCAAATACGGCGGCG 7801 || ||||| |||| || || |||| | | || || ||||| |||| | || | Sbjct 1981641 ATTGACGGTATTTTCA-CAT-CTGCACATCAATGTGCTTTGATTTCAAAATCTGCTGGTG 1981698 Query 7802 GAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGC-ATCGTGTCCACCAAC 7860 | || ||||| || ||| | | | ||||| || || | | || || | | ||| || Sbjct 1981699 GTATTGGTCTAAATGTACATTGCATACGCGCGAAAGGCA-CTGCGATTGCGGGCACAAAT 1981757 Query 7861 GGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTA 7920 || | | | ||||| | ||| ||| |||| ||||||||||| | | || |||| Sbjct 1981758 GGCACCTCGAATGGTTTGGTGCCAATGCTGCGAGTGTTCAATAATGTAGCACGTTATGTG 1981817 Query 7921 GACCA---GGGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCG 7977 || || || || || || ||||||| ||||||||| |||| || ||||| || Sbjct 1981818 GATCAAGGTGGCGGTAAACGGCCAGGCGCCTTTGCCATCTACCTGGAACCATGGCATGCT 1981877 Query 7978 GACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGC-- 8035 || || | || | | | || || |||| ||| |||| |||| |||| Sbjct 1981878 GATATATTCGAATTTTTGGATTTGAAGAAAAACACCGGTAAAGAAG--AGCACCGCGCCA 1981935 Query 8036 GCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACG 8095 | ||| | |||| || ||||| | || ||||| |||||||| || || | | | | Sbjct 1981936 GAGATTTGTTCTACGCTCTGTGGATACCTGATCTATTTATGAGACGTGTCGAAGCCAATG 1981995 Query 8096 CACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAA 8155 | | |||||||| |||||||| | || ||| ||| | | || | ||| Sbjct 1981996 AAGACTGGTCGCTAATGTGCCCACACAAATGTCCTGGTTTACATGAAGTGTGGGGTGAGG 1982055 Query 8156 AATTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGC-----GGCAAGT 8210 | |||||| ||||||| |||| ||||| || || |||||| | | || Sbjct 1982056 AGTTTGAAAAATTGTATCTGAAATATGAACAGGAAGG-----ACGTGCTAATAAGAAGGT 1982110 Query 8211 GAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTA 8270 ||||| | || |||||||| |||| ||| || || || | ||||| Sbjct 1982111 AAAAGCACAAAGTCTTTGGTTTGCCATTATTGAATCGCAAGTAGAGACTGGCACACCGTA 1982170 Query 8271 CATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTG 8330 |||| | || ||||| ||||| || || || ||||| || || ||||| ||| Sbjct 1982171 CATGTTATATAAAGATGCTTGTAATCGAAAGAGTAATCAGCAGAATGTTGGCACAATTAA 1982230 Query 8331 TTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTG 8390 || || ||| | || | |||||||| | || || ||||| || || || || || Sbjct 1982231 GTGTAGTAATTTATGTACCGAAATTGTGGAATATTCGGCACCCGATGAGGTAGCTGTGTG 1982290 Query 8391 CAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACGACTT 8450 || |||| ||| | || ||| || ||| || | || || || ||||| Sbjct 1982291 TAACTTAGCTTCGATCGCATTGAACATGT---TTGTCACACCCGAGAAAACGTATGACTT 1982347 Query 8451 TGAACAATTGAAAAACGCCGTGCAAGTGACGGT---ACGCAATTTAGATCGCATCATTGA 8507 | | | | ||| | | | ||| ||| || ||| ||||| || ||||| || Sbjct 1982348 TAAGCGCCTCAAAGAGGTC-ACCAA--GACCGTTACACGTAATTTGAATAAAATCATAGA 1982404 Query 8508 TGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGG 8567 | ||| |||||| | || || |||||| | | || | ||| | || Sbjct 1982405 CATTAATCATTATCCAATACCGGAGGCAAAGAAATCGAATTTCAGACATCGTCCCATCGG 1982464 Query 8568 CGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCA 8627 | ||||| |||||| | |||||||| || | |||| || |||||||| | Sbjct 1982465 TATTGGCGTACAAGGTTTTGCCGACGCTTTAATTTTAATGCGTTATCCATACGAAAGTGA 1982524 Query 8628 AGAAGCGCGCATGCTCAACATAA-AAATAGCGGAAACGGTGTATTACGGCGCATTAGAAG 8686 ||||| | ||| || || ||||| ||||| | || || || || | ||| Sbjct 1982525 TGAAGCATTC-CGCTTAAATCAACAAATATTCGAAACTATTTACTATGGTGCGCTGGAAT 1982583 Query 8687 CCAGCTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCA 8746 |||| || || | ||| | ||| ||||| || ||| | || | || || | | Sbjct 1982584 CCAGTTGCGAATTAGCCGAAAAATATGGCACTTATGAAACATATGTAGGTTCACCCGTTA 1982643 Query 8747 GCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGA 8806 | || || | || || ||||||||| || || || | | | |||||||||| Sbjct 1982644 GTAAGGGTATTCTACAGTATGACATGTGGGATAAGACACCAAGTGATCTTTGGAATTGGA 1982703 Query 8807 GCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACA 8866 ||| ||||| |||||| ||| || | || || || || || | || || Sbjct 1982704 CCGAATTGAAGGAGAAAATTAAGCAACATGGCGTTCGTAACTCTTTGCTGCTTGCGCCCA 1982763 Query 8867 TGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCAC 8924 |||| || || | || || ||||| ||||| ||||| || || ||||| || | ||| Sbjct 1982764 TGCCAACTGCTTCAACAGCACAAATTATGGGCAACAATGAGTCATTTGAACCATACAC 1982821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505169719858960