Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq11 558 5e-154 seq1 304 2e-77 >seq11 Length=2963766 Score = 558 bits (618), Expect = 5e-154 Identities = 1244/1848 (67%), Gaps = 22/1848 (1%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 |||||||| || || | || ||||| || ||||| |||||| |||| ||||| || Sbjct 1983190 GCGGGTTTCGTGCGCAAGTAATACATGCCAGTTTTGAGACCTGCCTTCCAACCGTAAAAG 1983131 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || ||| || |||||| ||| |||| || || | || || || | ||| |||||| Sbjct 1983130 TGTATAGAAGTAAGTTTGCCATAGTTTGGTTCAGCCACGTGTATGTTGAACGACTGACTT 1983071 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 |||||||||||||| || | |||||| |||||||| || | || || ||| ||| Sbjct 1983070 TGATCGATGAAAGCGCCACGATCTGCAGCCATTTTGATTGAGGTTTTCACAGAAATCTCC 1983011 Query 68575 CAAATAGTCTT--AAAAATCTGTTTGATATCATCTGGAAGGC--TCG-TATTTTGAATGG 68629 |||| ||| || | ||||| | |||| | ||| | | || | ||||| || | Sbjct 1983010 CAAACAGTTTTGTATAAATCGCGT--ATATGCTGTGGTATGGATTCAATGTTTTGTATCG 1982953 Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTA 68689 | || | | | |||||| |||| || || ||||||| |||||| ||| |||| Sbjct 1982952 AGCCGCGACTAGTTATAATATTATTTTTCATATCATCATCCCACAAACCCAACTCAGTTA 1982893 Query 68690 AAACTC-TAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTG 68748 | | | ||| || || |||| || | ||||||||| || || | ||| | || || Sbjct 1982892 GATCGCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGGCGTGTA 1982834 Query 68749 TAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGAT 68808 || ||||| || |||||||| | || ||||| || |||| |||||| || ||||| Sbjct 1982833 TAGATATTGGAAGTGTATGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAA 1982774 Query 68809 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCT 68868 ||||||||||| || || | || ||| || | || |||||| | ||||| || Sbjct 1982773 GCAGTTGGCATGGGCGCAAGCAGCAAAGAGTTACGAACGCCATGTTGCTTAATTTTCTCC 1982714 Query 68869 TTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGA 68928 || | | |||||| |||||||||| |||| || ||| | || || |||||| Sbjct 1982713 TTCAATTCGGTCCAATTCCAAAGATCACTTGGTGTCTTATCCCACATGTCATACTGTAGA 1982654 Query 68929 ATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGT 68988 || || ||||| | ||| || |||||||||||||| || | | ||| |||| | Sbjct 1982653 ATACCCTTACTAACGGGTGAACCTACATATGTTTCATAAGTGCCATATTTTTCGGCTAAT 1982594 Query 68989 TCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048 || ||||| | || | ||||| || ||||| |||||||| || | | ||| | Sbjct 1982593 TCGCAACTGGATTCCAGCGCACCATAGTAAATAGTTTCGAATATTTGTTGATTTAAGCGG 1982534 Query 69049 TGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGA 69108 |||||| ||| ||| |||||||| | | | ||| || || || || || || || Sbjct 1982533 AATGCTTCATCACTTTCGTATGGATAACGCATTAAAATTAAAGCGTCGGCAAAACCTTGT 1982474 Query 69109 ACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAA 69168 || ||||||||||| || | |||||| ||| || | | || || || || |||||| Sbjct 1982473 ACGCCAATACCGATGGGACGATGTCTGAAATTCGATTTCTTTGCCTCCGGTATTGGATAA 1982414 Query 69169 TAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGT 69228 | |||||| ||||| |||||||| | ||| || || || || || || || Sbjct 1982413 TGATTAATGTCTATGATTTTATTCAAATTACGTGTAACGGTCTTGGTGACCTCTTTGAGG 1982354 Query 69229 TTGAGAAAATCAAA--TCGTC-CATCTATAACAAACATATTCAGTGCTACAGATGCTAGA 69285 ||| ||| | | || | | | |||||||| |||| ||| | || |||| Sbjct 1982353 CGCTTAAAGTCATACGTTTTCTCGGGTGTGACAAACATGTTCAATGCGATCGAAGCTAAG 1982294 Query 69286 TTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTA 69345 ||||| || |||||||||| | | ||||| | || || ||||||| ||||||| Sbjct 1982293 TTACACACAGCTACCTCATCGGGTGCCGAATATTCCACAATTTCGGTACATAAATTACTA 1982234 Query 69346 CATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGA 69405 || || || || || | ||| ||||||||||||||| ||||| || || || || | Sbjct 1982233 CACTTAATTGTGCCAACATTCTGCTGATTACTCTTTCGATTACAAGCATCTTTATATAAC 1982174 Query 69406 ATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCA 69465 || |||| || ||||| || | || ||||| ||||| | ||||| ||| | Sbjct 1982173 ATGTACGGTGTGCCAGTCTCTACTTGCGATTCAATAATGGCAAACCAAA-GACTTTGTGC 1982115 Query 69466 TTTATTACGGTCTT-GTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCGAAT 69522 || |||| |||| || | | || || | |||||||| ||| | ||| || Sbjct 1982114 TT--TTACCTTCTTATTAGCACGTCCTTCCTGTTCATATTTCAGATACAATTTTTCAAAC 1982057 Query 69523 TCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACA 69582 || || ||||| || |||| || |||||||||| | ||| ||||| | ||||| | Sbjct 1982056 TCCTCACCCCACACTTCATGTAAACCAGGACATTTGTGTGGGCACATTAGCGACCAGTCT 1981997 Query 69583 TCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCT 69642 |||| | | || ||| ||||||||||||| || ||||| ||||| || | |||| Sbjct 1981996 TCATTGGCTTCGACACGTCTCATAAATAGATCAGGTATCCACAGAGCGTAGAACAAATCT 1981937 Query 69643 CTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCA 69702 |||| | | ||||| || || || ||||| || | ||| | ||| || | |||||| Sbjct 1981936 CTGGCGCGGTGCTCTTCTTTACCGGTGTTTTTCTTCAAATCCAAAAATTCGAATATATCA 1981877 Query 69703 GAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCT 69762 | |||||||||||| || || || || | | | || || |||||| || || ||||| Sbjct 1981876 GCATGCCATGGTTCCAGGTAGATGGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCC 1981817 Query 69763 ATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCA 69822 | || | || ||||| | |||| |||||| || | | |||||| || | ||| Sbjct 1981816 ACATAACGTGCTACATTATTGAACACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCA 1981757 Query 69823 TTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCT 69882 ||||| || | ||| | | ||| | ||||| || | | | |||||| || || Sbjct 1981756 TTTGTGCCCGCAATCGCAGTGCCTTTCGCGCGTATGCAATGTACATTTAGACCAATACCA 1981697 Query 69883 CCTGCCATTTTAGAGATTAGAGCACAACG-TTTCAATGTGTCATATATACCCTCTATGCT 69941 || || ||| || || | |||||| | | | | ||| | | ||||| || ||| Sbjct 1981696 CCAGCAGATTTTGAAATCAAAGCACATTGATGTGCAGATGTGA-AAATACCGTCAATGGA 1981638 Query 69942 ATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATT 70001 ||| || | |||| |||| | || || |||| ||| | ||| | || | ||| Sbjct 1981637 ATCGTCCACCATGGTAAGTAAGAAGCATGATGACAATTGCGGCTGTTTGGTGGCAGCAGC 1981578 Query 70002 AAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061 || | ||| || || || || || || | || ||||||| |||||||||||||| Sbjct 1981577 GAAGAGTGTCGGCGAAGCATGTGTAAAATAACGCTCGGAAAGCAAGTTGTATGTTTCAAT 1981518 Query 70062 AGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAG 70120 |||| || ||||| ||| ||| || || || || || ||||| ||||||||||| | Sbjct 1981517 TGCTGCATCGATATCTTCAC-CATGTATACCGATGGCAACGCGCATTAACATATGCTGTG 1981459 Query 70121 GTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACC 70180 |||| || || |||| ||| | || | || || || ||| || |||||||| | Sbjct 1981458 GTCGCTCAACAATTTTGCCATTCAACTTGAGCAAATAGGAACGTTCAAGCGTTTTAAAAC 1981399 Query 70181 CAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228 ||||||| ||||| ||| || | || || || ||| |||| |||| Sbjct 1981398 CAAAATAATTGTAACCAAAATCGCGGTCATATATGATAGCAGAGTTTA 1981351 >seq1 Length=5074932 Score = 304 bits (336), Expect = 2e-77 Identities = 495/711 (70%), Gaps = 5/711 (1%) Strand=Plus/Plus Query 39442 AATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTAT 39501 || ||| | ||| || |||||||| || || ||| | || ||||||||| || || Sbjct 4719467 AAGCAAACGATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAATTCATACCGAT 4719526 Query 39502 GAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTAT 39561 | ||||| || | ||| || |||| || |||| || || || || |||| || Sbjct 4719527 TAAATTAACCGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACAGCTTCTGAAAT 4719586 Query 39562 TATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGC 39621 ||| | | |||| ||| ||| || | ||||||| |||||||| || || Sbjct 4719587 TATTTCAACAATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGGAACATTAAACATGC 4719646 Query 39622 GAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGG 39681 ||||||||||||||| |||||||||| |||| ||| ||||||||||| | ||||| Sbjct 4719647 GAAGTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAATGTCAAGCCAGG 4719706 Query 39682 CATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCC 39741 ||||| ||| || || || |||||||| || | ||||||| ||| ||||| ||||| Sbjct 4719707 CATTAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACTGAAGAAAATGCC 4719766 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTA----TCC 39797 ||| || || |||||||||| | | || || || ||| | | | | ||| Sbjct 4719767 TTCAACAGCGGCAAATGCAATTACACGTTCACCA-AAGTTGGCCGACTTAGAAGAAATCC 4719825 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 | ||||||||||||| || |||||| ||||||||| || ||||| || || | Sbjct 4719826 AAGCAAGTGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTCAATAGCGTTGAATA 4719885 Query 39858 GATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 |||| | ||| | ||| |||| ||| ||||| ||||| | |||||||||||| | Sbjct 4719886 AGTAATTTCTTTGTTTCGAATCCTTAATATACGTATCAATTAATATACTATACATTTCAG 4719945 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTA 39977 |||| | ||||| || || || |||||||| || || || | ||| || |||| ||| | Sbjct 4719946 AATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTAACTTGCA 4720005 Query 39978 CCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAA 40037 | ||| | || | ||| | |||||||||||||| || |||||| ||||| || | Sbjct 4720006 CTTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGATGCGGCGAAGA 4720065 Query 40038 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGA 40097 | || || || ||| ||| |||| | ||||| || | ||| |||| | Sbjct 4720066 AGGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCA 4720125 Query 40098 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 ||||||| || | ||||||||| ||| ||||||| ||||| || ||||||| Sbjct 4720126 TATCTTTAGAAAGATCTACTTCCTCAACTGTCCAGAACGATGCTTCTGCCT 4720176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686597990940720