Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq28 199 3e-46 seq1 185 7e-42 seq305 104 2e-17 >seq28 Length=1372515 Score = 199 bits (220), Expect = 3e-46 Identities = 393/576 (68%), Gaps = 8/576 (1%) Strand=Plus/Minus Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 || || || ||||||||||| || || |||||||| ||||||| ||| |||||||| || Sbjct 390305 GACAGAGAAGAAGGTGATCTAGGCCCAGTTTATGGTTTTCAGTGGCGTCATTTTGGGGCC 390246 Query 40914 AAATAT-GACACT--ATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGC 40970 || || || | | | | || || || | || | || || |||||| | ||| Sbjct 390245 AAGTACAGAAATTGCAAGGACACT---TACAAAGATGAGGGTATAGATCAACTTCAGCAA 390189 Query 40971 GTTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAAC 41030 || || || || | | | | |||| || |||||||| ||| ||| || ||||| Sbjct 390188 GTAATTGACACAGTCAGAAACAATCCAAATGATCGACGTATTATAATGTCTGCTTGGAAT 390129 Query 41031 CCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTT 41090 ||| || | | | ||||| | ||||||||||||| | || |||| ||| Sbjct 390128 CCAGTCGATATTCCTCAAATGGCTCTACCACCTTGTCATTGCCTTACACAATTTTTTGTT 390069 Query 41091 TGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTC 41150 |||||| || | || |||||||| || ||| | | |||||||||| | || || Sbjct 390068 GCCAATGGAGAGTTATCTTGTCAATTATACCAACGCAGTGCTGACATGGGATTGGGTGTA 390009 Query 41151 CCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTA 41210 || ||||| || || || ||| | || || || |||||||| || |||| || | Sbjct 390008 CCATTTAATATTGCCTCGTACGCTTTACTTACCTACATGATTGCTCATATTACTGATCTC 389949 Query 41211 AAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAG 41270 || || || || || ||||| || || |||| |||| | || | |||||| || || Sbjct 389948 CGGCCAGGGGATTTCGTCCACACTTTGGGTGATGCACATGTCTATAATAATCATATTGAA 389889 Query 41271 CCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGC 41330 || |||||||||| | |||||||||||||| | ||||| | |||||||||| || Sbjct 389888 GCGCTAACAGAACAGTTAACACGAAAACCTAGGGCGTTTCCTAAATTACTTATTAAGCGT 389829 Query 41331 GCTGTTGAAAA-CATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCC 41389 | ||| ||| |||||| ||||| | | ||||||| ||| | | |||||||| Sbjct 389828 GA-GTTAAAATGCATTGAAGATTTCACTTTTAAGGATTTTGAAGTTATCAACTACAATCC 389770 Query 41390 GTACCCTAAAATCCACATGGACATGTCTGTATGATA 41425 ||| || ||||| ||||| ||| |||| | ||| Sbjct 389769 GTATCCGAAAATTTCAATGGAAATGGCTGTTTAATA 389734 >seq1 Length=5074932 Score = 185 bits (204), Expect = 7e-42 Identities = 406/603 (67%), Gaps = 14/603 (2%) Strand=Plus/Minus Query 43874 GACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAA 43933 || || || || ||||||||||| ||| || || |||||||| ||| | |||| Sbjct 4720051 GATGGTATTGTGAATGAAAATTTAGTTGAACGCTTCAGCCAAGAAGTGCAAGTTACAGAG 4719992 Query 43934 GCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993 ||||| || || ||||| ||||||||||| || |||||| | ||||| |||||||| ||| Sbjct 4719991 GCACGTTGCTTCTATGGATTTCAAATTGCTATGGAAAATGTGCATTCTGAAATGTATAGT 4719932 Query 43994 CTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATA 44053 | | || |||||||| || || ||| | | | | || || || || || || Sbjct 4719931 ATATTAATTGATACGTATATTAAGGATTCGAAACAAAGAAATTACTTATTCAACGCTATT 4719872 Query 44054 GAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAA- 44112 || ||| | |||||| | || | ||| || || ||||| ||| ||||| ||| || Sbjct 4719871 GAGACAATGCCTGCGGTAAAGCGTAAGGCTGATTGGGCACTTGCTTGGATTTCTTCTAAG 4719812 Query 44113 --TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA 44170 | ||||| ||||| | | || ||||| | ||| |||||||||||||| Sbjct 4719811 TCGGCCAACTTTGGTGAACGTGTAATTGCATTTGCCGCTGTTGAAGGCATTTTCTTCAGT 4719752 Query 44171 GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230 || ||||| | || |||||| | |||||||| ||||| |||||||| ||||| ||| Sbjct 4719751 GGCAGTTTTGCTTCGATCTTTTGGCTTAAGAAACGCGGTTTAATGCCTGGCTTGACATTT 4719692 Query 44231 TCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTT 44290 || ||||| |||| || ||||| || ||||||| || || || || || | | Sbjct 4719691 TCTAATGAACTAATCTCACGAGATGAGGGTCTACATTGTGACTTCGCATGTTTAATGTTC 4719632 Query 44291 GGATATCTAGGAGACGATAAGC-CTTCATGTAAGACAATTACAGATATTGTTGTAGAGGC 44349 | || | || || | || | | ||| | | |||| || || || ||| || Sbjct 4719631 CAACATTT--GATACAAAAACCAAGTAATGAACG--AATTGTTGAAATAATTTCAGAAGC 4719576 Query 44350 AGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA 44409 || | || || |||||||| | || || || || || |||||||| || ||||| Sbjct 4719575 TGTTACAATTGAGCAAGAATTCTTAACTGACGCTTTGCCGGTTAATTTAATCGGTATGAA 4719516 Query 44410 ---TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACT 44466 | ||| | ||| | ||||| |||| | || |||||||| ||| | ||||| Sbjct 4719515 TTGTAAAC---TAATGTCTGATTATATCGAATTTGTGGCTGATCGTTTGCTTGTCGAACT 4719459 Query 44467 GGG 44469 ||| Sbjct 4719458 GGG 4719456 >seq305 Length=215067 Score = 104 bits (114), Expect = 2e-17 Identities = 260/389 (67%), Gaps = 12/389 (3%) Strand=Plus/Plus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG---T 19605 ||||| |||||||| | |||||| | || || ||||| || | || || | | Sbjct 135336 TTGCATATTATAATTTTCGATGAAATAGATGCGATCTGCAAAGCTCGTGGCTCGGTCGCT 135395 Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| || ||||| || || || ||||||||| | || | ||| | || ||||| Sbjct 135396 GGCAATAGTGGTGTACACGATACAGTAGTCAATCAATTGCTTGCTAAAATTGATGGTGTC 135455 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || |||| || || | || || |||||||| || |||| || | || ||| Sbjct 135456 GAACAGTTGAACAACATACTGGTGATCGGCATGACAAACAGACGTGACATGATTGACGAA 135515 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || || | ||||||||||| ||||| | | || || |||| || || | ||| Sbjct 135516 GCTTTGATGCGACCCGGTCGCTTGGAGGTGCAAATGGAGATTAGTTTGCCGAACGAAGAA 135575 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840 || |||||| ||||| |||| |||||||| || | ||||| || |||| || Sbjct 135576 GGTCGTGTGCAAATTCTAAATATACATAC--GAAGCGTATGCGGGAATTTAACAAGATAG 135633 Query 19841 ATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAA 19899 | ||||| || || ||| |||||||| | || || |||| ||| ||||| || Sbjct 135634 CCGGTGATGTTGA-CTCGAAGGAAATTGCTACATTAACGAAGAACTTTAGTGGCGCTGAG 135692 Query 19900 CTTGAGGGATTAGTGAGGGCCGCCCAATC 19928 || ||||| || ||| | || || ||||| Sbjct 135693 CTGGAGGGTTTGGTGCGCGCAGCACAATC 135721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397280657068990