Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq11 282 4e-71 seq138 132 4e-26 seq4 132 4e-26 >seq11 Length=2963766 Score = 282 bits (312), Expect = 4e-71 Identities = 1024/1579 (65%), Gaps = 45/1579 (3%) Strand=Plus/Minus Query 130403 CTGTTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATG 130462 || || || || || ||||| || ||||| | ||| || || |||||||| ||||||||| Sbjct 1983223 CTTTTGTCCACAGTAAATTGTATAGCATTTGCGGCGGGTTTCGTGCGCAAGTAATACATG 1983164 Query 130463 CCTGTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGG--TAAT 130520 || |||||||| || || || ||| ||| || | | ||||| || | Sbjct 1983163 CCAGTTTTGAGACCTGCCTTCCAACCGTAAAAGTGTATA--GAAGTAAGTTTGCCATAGT 1983106 Query 130521 TGGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTG 130580 | |||| |||||| |||||||| ||| || |||||| || |||||||| | |||| Sbjct 1983105 TTGGTTCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCTG 1983046 Query 130581 CAGCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAA 130640 ||||||| | || |||||| ||||||||| | || ||||||| ||| | | Sbjct 1983045 CAGCCATTTTGATTGAGGTTTTCACAGAAATCTCCCAAACAGTTTTGTATAAATCGCGTA 1982986 Query 130641 TGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGC 130700 | || | |||||| |||| ||| | ||| | | |||||| | || Sbjct 1982985 TATGCTGTGGTATGGATTCAATGTTTTGTATCGAGCCGCGACTAGTTATAATATTATTTT 1982926 Query 130701 GCATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGA 130760 |||| | ||| |||| || | || ||||| || ||| |||| ||| | | Sbjct 1982925 TCATATCATCATCCCACAAACCCAACTCAGTTAGATCGCGTAACAAGTGATGATTTACAA 1982866 Query 130761 TTTGAAAATCACCAGCCAGGAC---GCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAA 130817 |||||| ||||| | || || |||| || || || ||| ||| | ||||||| Sbjct 1982865 CTTGAAATTCACCCGAAAGCACACGGCGTGTA---TAGATATTGGAAGTGTATGGTTCAA 1982809 Query 130818 AGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATA 130877 | || || |||||||| | ||||||||||| | || || |||||| || | | | Sbjct 1982808 ATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGCA 1982749 Query 130878 GAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAG 130937 ||| ||||||| || || | | ||||| ||||||||| ||||| ||| ||| Sbjct 1982748 AAGAGTTACGAACGCCATGTTGCTTAATTTTCTCCTTCAATTCGGTCCAATTCCAAAGAT 1982689 Query 130938 AGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGG 130997 | ||| | || | |||||| ||| | ||||| || || ||||| |||| || Sbjct 1982688 CACTTGGTGTC---TTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGG--TGA 1982634 Query 130998 A--TTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGC 131055 | | | | | ||| || | || | || | ||| || | ||||| || Sbjct 1982633 ACCTACATATGTTTCATAAGTGCCATATTTTTCGGCTAATTCGCAACTGGATTCCAGCGC 1982574 Query 131056 TCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTA 131115 || || ||||| |||||| ||||||| |||||| | |||| | || ||||| Sbjct 1982573 ACCATAGTAAATAGTTTCGAATATTTGTTGATTTAAGCGGAATGCTTCATCACTTTCGTA 1982514 Query 131116 AGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCT 131175 ||| | ||||||||| |||||||| || | ||| |||| |||| || | || | Sbjct 1982513 TGGATAACGCATTAAAATTAAAGCGTCGGCAAAACCTTGTACGCCAATACCGATGGGACG 1982454 Query 131176 ATGTTTTAAATTACATTTACGCGAACATTCGGTG--GGATAAAGGTTAATGTCAATTATT 131233 |||| | ||||| |||| | | | |||| |||||| | |||||||| || ||| Sbjct 1982453 ATGTCTGAAATTCGATTTCTTTG--CCTCCGGTATTGGATAATGATTAATGTCTATGATT 1982396 Query 131234 TTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTG 131293 || || ||||| || || | | ||||| ||| | | || ||| |||| Sbjct 1982395 TTATTCAAATTACGTGTAACGGTCTTGGTGACCTCTTTGAGGCGCTTAAAGTCATACGTT 1982336 Query 131294 CCAGTTTCGAGGTTTACAAATTGATTTACACAT---ATTGACGCCAGATTACAAACTGCC 131350 | ||| | | ||||| || | || || || || || | ||||| || || Sbjct 1982335 T---TCTCGGGTGTGACAAAC--ATGTTCA-ATGCGATCGAAGCTAAGTTACACACAGCT 1982282 Query 131351 GTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTG 131410 || || | |||| | |||||||||| || |||||||| | ||| || ||| Sbjct 1982281 ACCTCATCGGGTGCCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTG 1982222 Query 131411 CCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGCGT 131469 || | ||| || ||||| || || ||| ||| | || || || | |||||| || || Sbjct 1982221 CCAACATTCTGCTGATTACTCTTTCGATT-ACAAGCATCTTTATATAACATGTACGGTGT 1982163 Query 131470 GCCCGTTTCGACTTGAGTTTCAATAATGT--ATCGAAAGAGTTTTCGAGCAGACAATTGA 131527 ||| || || ||||| | |||||||||| | | ||||| ||| | || || Sbjct 1982162 GCCAGTCTCTACTTGCGATTCAATAATGGCAAACCAAAGACTTTGTGCTTTTACC-TTCT 1982104 Query 131528 TATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAAC 131587 |||| | | | || | ||| || || ||||| ||||||| | | || || Sbjct 1982103 TATTAGCAC-GTCCTTCCTGTTCATATTTCAGATACAATTTTTCAAACTCCTCACCCCAC 1982045 Query 131588 GAACTG--TCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTT 131645 ||| | ||| ||||||| | || |||||||||||||| | | || || Sbjct 1982044 --ACTTCATGTAAACCAGGACATTTGTGTGGGCACATTAGCGACCAGTCTTCATTGGCTT 1981987 Query 131646 CAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTT 131705 | || || ||||||| | ||| || | ||| | ||||| |||| |||||| || | Sbjct 1981986 CGACACGTCTCATAAATAGATCAGGTATCCACAGAGCGTAGAACAAATCTCTGGCGCGGT 1981927 Query 131706 TCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGG 131765 ||||||| |||| | |||| ||||||| ||||| || || || || |||||||| | Sbjct 1981926 GCTCTTCTTTACCGGTGTTTTTCTTCAAATCCAAAAATTCGAATATATCAGCATGCCATG 1981867 Query 131766 GTTCCAAATACACTGCCATTGCGCCTTTGCGCTTACCG---CCTTGATTAACATGACGAA 131822 |||||| || | || | |||||| || |||||| ||||||| |||| ||| Sbjct 1981866 GTTCCAGGTAGATGGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCCACATAACGTG 1981807 Query 131823 CCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCT 131882 | | || ||| | || |||| ||| ||| ||||||| || | | | ||||| |||| | Sbjct 1981806 CTACATTATTGAACACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCATTTGTGCCCG 1981747 Query 131883 TAAT-GTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTAT 131941 ||| | || |||| || || | || || || || || |||||||| || | || Sbjct 1981746 CAATCGCAG-TGCCTTTCGCGCGTATGCAATGTACATTTAGACCAATACCACCAGCAGAT 1981688 Query 131942 TTAGAGATTAGTGCGCATT 131960 || || || | || |||| Sbjct 1981687 TTTGAAATCAAAGCACATT 1981669 >seq138 Length=433312 Score = 132 bits (146), Expect = 4e-26 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 || |||||||||||||| ||||| |||||||| ||||| || |||| ||| | || || Sbjct 21737 ACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCCAATGT-GCGACCATCCTC 21679 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||| ||||| |||| |||||||||||||| ||||| | ||| || ||||| Sbjct 21678 CAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGAATACCTTCCTTATCTTG 21619 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || ||| || | ||| | ||| || | | |||||| || ||||| || | || Sbjct 21618 AATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTCTT 21559 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTG 27252 |||||| || ||||| || || |||||||| |||| Sbjct 21558 GCCCGTAAGGGTTTTTACGAAAATTTGCATTGCTG 21524 >seq4 Length=3596895 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| ||||||||||| || | || || || |||||||| |||||||| | Sbjct 3261293 CCACCACGCAAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGAC 3261234 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || | || ||||||||| | || | ||| |||||||| || || Sbjct 3261233 AGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGA 3261174 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| ||||||| ||| | |||||| ||||| | | ||||||| Sbjct 3261173 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACT 3261114 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | |||||| || || || ||||| || ||||||||| Sbjct 3261113 TCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCATA 3261066 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| ||||||||||| || | ||||| ||||| || || || || ||| | Sbjct 3261065 CCACCACGCAAACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGAC 3261006 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| ||||||| | ||| ||||||||| | || ||||| |||||||| || || Sbjct 3261005 AGGGTGCGACCGTCTTCCAACTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGA 3260946 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| |||||| || | | | || | || |||| || || ||| Sbjct 3260945 ATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACT 3260886 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | |||||| || || || ||||| |||||||||||| Sbjct 3260885 TCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCATA 3260838 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||||||||| || | ||||| ||||| || || || || ||| || | |||| || Sbjct 3260295 CGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGTCCG 3260236 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | |||||| |||||| | || | ||| |||||||| || || | ||||| ||| Sbjct 3260235 TCTTCCAACTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCCTCCTTA 3260176 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| || | | | || | || |||| || || ||||| | || || Sbjct 3260175 TCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATG 3260116 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | |||||| || || || ||||| |||||||||||| Sbjct 3260115 GTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCATA 3260080 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||||||||| | || | |||||||| | || || || || || |||||||||||| Sbjct 3261522 GCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGA 3261463 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | || | || ||||| || ||||||||| | || ||||| |||||||| || || Sbjct 3261462 CAAAGTTCGTCCATCCTCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGG 3261403 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAA 27198 | ||||| ||||| ||||| || | | || | ||||| | |||| |||| Sbjct 3261402 AATGCCCTCCTTATCTTGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGC-TCAA 3261344 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| | ||| |||| |||||| || || || ||||| || ||||||||| Sbjct 3261343 CTTCCAAAGTAATAGTTTTGCCGGTGAGTGTCTTCACGAAAATTTGCATA 3261294 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| || | || || || | || || || || || || ||||||||| | Sbjct 3259851 CCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAC 3259792 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| || | || ||||||||| | || ||||| |||||||| || || Sbjct 3259791 AAGGTACGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGAGGA 3259732 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || || ||| ||| | | |||| | || || | | |||||| Sbjct 3259731 ATACCCTCCTTGTCCTGAATTTTGGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACC 3259672 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | ||| ||||||| ||||| || |||||||||||| Sbjct 3259671 TCCAGAGTAATTGTTTTACCCGTCAATGTTTTAACGAAGATTTGCATA 3259624 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| || | || || || | || || || || ||||| |||||||| | Sbjct 3260079 CCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCTGAC 3260020 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || | || ||||||||| | || | ||| |||||||| || || Sbjct 3260019 AGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 3259960 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| |||||| || | | | || | || |||| | || ||| Sbjct 3259959 ATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGCTCTACT 3259900 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| |||| |||||| ||||| || ||||| |||||||||||| Sbjct 3259899 TCCAAAGTAATAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 3259852 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || || || || ||||| ||| || | |||| ||||||| Sbjct 3259377 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 3259318 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || |||||||| | || | ||| |||||||| || || | || ||||| || Sbjct 3259317 AGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGA 3259258 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | |||| | ||| || | | |||||| || ||||| || | ||| Sbjct 3259257 ATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 3259198 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| || ||||| ||||||||||| Sbjct 3259197 CCAGTCAAGGTCTTCACGAAGATTTGCAT 3259169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424746934612176