Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11 120 4e-22 >seq11 Length=2963766 Score = 120 bits (132), Expect = 4e-22 Identities = 542/853 (64%), Gaps = 7/853 (1%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| | ||||| |||||||| ||||||||||| ||||| ||||| || ||| | | Sbjct 1981458 CCACAGCATATGTTAATGCGCGTTGCCATCGGTATACATGGTGAAGATATCGATGCAGCA 1981517 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | || |||||| || | | ||| | || || | || || | || || |||||| Sbjct 1981518 ATTGAAACATACAACTTGCTTTCCGAGCGTTATTTTACACATGCTTCGCCGACACTCTTC 1981577 Query 104342 AATGCTGGTACACCAAGACCC-CAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||||| || | || | || ||| |||| |||||| | | ||| ||| || Sbjct 1981578 GCTGCTGCCAC-CAAACAGCCGCAATTGTCATCATGCTTCTTACTTACCATGGTGGACGA 1981636 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || || ||||||| | | || | ||||| || ||||| | ||||| Sbjct 1981637 TTCCATTGACGGTATTTTCACATCTGCACATCAATGTGCTTTGATTTCAAAATCTGCTGG 1981696 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 |||||||| | | | ||| | | || || || ||| ||| ||||| Sbjct 1981697 TGGTATTGGTCTAAATGTACATTGCATACGCGCGAAAGGCACTGCGATTGCGGGCACAAA 1981756 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 ||| || ||||| | | |||||||| || || || || ||| || ||||| Sbjct 1981757 TGGCACCTCGAATGGTTTGGTGCCAATGCTGCGAGTGTTCAATAATGTAGCACGTTATGT 1981816 Query 104581 AAATCAAGCTGGGCGTCGAAAG---GGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 104637 |||||| ||| || | | || | | || |||| || || |||||||| || Sbjct 1981817 GGATCAAGGTGGCGGTAAACGGCCAGGCGCCTTTGCCATCTACCTGGAACCATGGCATGC 1981876 Query 104638 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC- 104696 ||||| | || || | || ||| ||| ||| | || ||| | | | ||| Sbjct 1981877 TGATATATTCGAATTTTTGGATTTGAAGAAAAACACCGGTAAAGAAGAG-CACCGCGCCA 1981935 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 | ||| | |||| |||||| ||||| || ||||| || |||| | || || | | || Sbjct 1981936 GAGATTTGTTCTACGCTCTGTGGATACCTGATCTATTTATGAGACGTGTCGAAGCCAATG 1981995 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGG 104816 | ||||| || | || ||| |||| |||||| | || | |||||||| Sbjct 1981996 AAGACTGGTCGCTAATGTGCCCACACAAATGTCCTGGTTTACATGAAGTGTGGGGTGAGG 1982055 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAG 104876 |||||||| | || || || || | ||||| || || | | || ||| || Sbjct 1982056 AGTTTGAAAAATTGTATCTGAAATATGAACAGGAAGGACGTGCTAATAAGAAGGTAAAAG 1982115 Query 104877 CTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGC 104936 | | | ||| || ||| | | || ||| |||||||| ||||| |||||| Sbjct 1982116 CACAAAGTCTTTGGTTTGCCATTATTGAATCGCAAGTAGAGACTGGCACACCGTACATGT 1982175 Query 104937 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 104996 | || ||||| || ||||| | |||||||||||| ||||| | || || ||| || Sbjct 1982176 TATATAAAGATGCTTGTAATCGAAAGAGTAATCAGCAGAATGTTGGCACAATTAAGTGTA 1982235 Query 104997 CCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACC 105056 ||| | ||||| ||||| |||||| | | | |||||| |||||||||||| Sbjct 1982236 GTAATTTATGTACCGAAATTGTGGAATATTCGGCACCCGATGAGGTAGCTGTGTGTAACT 1982295 Query 105057 TCGCATCAATCGC 105069 | || || ||||| Sbjct 1982296 TAGCTTCGATCGC 1982308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582996889069520