Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4 167 2e-36 seq15 154 1e-32 seq138 129 5e-25 seq385 116 3e-21 >seq4 Length=3596895 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| |||||| | || ||||| || || ||||| ||| Sbjct 3259169 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATCC 3259228 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || ||||||||||||||||| || || || |||||| Sbjct 3259229 GATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGATCAA 3259288 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | ||||| || ||| |||||||| | ||| | |||||||||||| Sbjct 3259289 CAACGTTTAATCTTTGCCGGTAAGCAACTGGAAGACGGACGCACCTTGTCCGATTACAAC 3259348 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||||||||| | ||| | || |||||||| Sbjct 3259349 ATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGGCAT 3259398 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || |||||| |||| || || | || ||| | || || || || || Sbjct 3259396 CATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTC 3259455 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| |||||| ||||||||||| || ||||| || || || ||||| Sbjct 3259456 CGATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCA 3259515 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||||| || | ||| |||||||| ||||| || | || | |||||||| || Sbjct 3259516 ACAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGATTATAA 3259575 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || |||||||| ||| | || ||||| ||||| || Sbjct 3259576 TATTCAGAAGGAATCCACTTTACATTTAGTTCTACGCTTGCGTGGTGGTAT 3259626 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || |||||||| | || || | ||||| ||||| ||| Sbjct 3261067 ATGCAAATTTTCGTGAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTTGAACCATCC 3261126 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || || || || || |||||||| || || |||||| Sbjct 3261127 GACACCATAGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGATCAA 3261186 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||| || |||||||| ||| | ||| | || || |||||| Sbjct 3261187 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCAGACTACAAC 3261246 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || ||||| ||||||||||| ||||| || Sbjct 3261247 ATTCAAAAGGAATCAACTCTTCACTTGGTATTGCGTTTGCGTGGTGGTAT 3261296 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || ||||| | || || | ||||| || || || Sbjct 3260839 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260898 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || ||||| || |||||||| ||||| |||||| Sbjct 3260899 GATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCACCAGATCAA 3260958 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| || || ||||||||| || ||| | |||||||| ||| Sbjct 3260959 CAACGTCTGATCTTCGCCGGTAAGCAGTTGGAAGACGGTCGCACCCTGTCCGATTATAAC 3261018 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || ||||| ||||||||||| ||||| || Sbjct 3261019 ATCCAGAAAGAGTCTACTCTTCACTTGGTATTGCGTTTGCGTGGTGGTAT 3261068 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| ||||| |||||||| | ||||| || || || Sbjct 3259853 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACTATTACTTTGGAAGTAGAGCCTTCA 3259912 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || ||||| || || || || ||||| |||||| Sbjct 3259913 GATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCAA 3259972 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||| || |||||||| ||| | ||| | || || |||||| Sbjct 3259973 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCAGACTACAAC 3260032 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || ||| | || || || | || ||||| ||||| || Sbjct 3260033 ATTCAGAAGGAATCAACCCTCCACTTAGTCCTTCGCTTGCGTGGTGGTAT 3260082 Score = 132 bits (146), Expect = 4e-26 Identities = 176/243 (72%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || ||||| | || || | ||||| || || || Sbjct 3260081 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260140 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || ||||| || || || || ||||| |||||| Sbjct 3260141 GATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATTCCACCAGATCAA 3260200 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||||||||| ||||||||| | ||| | |||||||| ||| Sbjct 3260201 CAACGTTTGATCTTCGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGATTATAAC 3260260 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 || || || ||||| || | || ||||| |||||| | || ||||| || |||| ||| Sbjct 3260261 ATCCAGAAAGAGTCTACTCTTCACTTGGTATTGCGTCTCCGTGGTGGTAT-GCAAATACT 3260319 Query 27228 TTT 27230 || Sbjct 3260320 CTT 3260322 >seq15 Length=2140121 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| | || || ||| | || || | || || || || || Sbjct 600444 ATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTCT 600385 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| ||||| ||||||||||| || || || || || ||| Sbjct 600384 GACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGACCAA 600325 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| |||||||| ||||| || ||| | ||||| |||||| Sbjct 600324 CAGCGTTTGATCTTCGCCGGAAAACAATTAGAAGATGGTCGCACCTTGTCCGACTACAAC 600265 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | || |||||| ||||| | || ||||| || Sbjct 600264 ATTCAAAAGGAGTCAACACTCCACTTGGTTCTGCGTCTTCGAGGTGGTAT 600215 >seq138 Length=433312 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || ||||| || || |||||||| || || |||||| | || |||||||| || ||||| Sbjct 21526 GCAATGCAAATTTTCGTAAAAACCCTTACGGGCAAGACCATCACTCTTGAGGTTGAACCT 21585 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || || | ||||| || || ||||||||||| || ||||| || || || ||| Sbjct 21586 TCGGATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGTATTCCGCCAGAT 21645 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||||||| |||| | ||||| ||||| ||||| || || || | | || || Sbjct 21646 CAACAGCGTCTAATTTTTGCCGGAAAACAGTTGGAGGATGGTCGCACATTGGCTGACTAT 21705 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || ||||| || ||||| || |||||||| || | ||| | | |||||| Sbjct 21706 AATATTCAGAAAGAGTCTACGTTACATTTAGTCCTTCGTCTTAGAGGTGGC 21756 >seq385 Length=177728 Score = 116 bits (128), Expect = 3e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535 ||||| || || ||| ||| | ||| |||||||||||||||| |||| | || | | Sbjct 114438 TGGAATGCAGCCCAAATACAGTTGTTGCGTGAAGGCAAAATGCACGCATTTCTTCGTAAG 114379 Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCA 135595 |||||||||||||||||| |||||||||| || || | |||||||||| || || Sbjct 114378 TATTGGGCAAAAAAGATACTGGAATGGTCCAACTCACCAGAAGAGGCGCTAGAAACTGCC 114319 Query 135596 ATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 || | ||| ||||| | ||||||||||| || | ||| | || || || || ||| Sbjct 114318 ATTTATTTAAATGACAAGTACAGTTTAGACGGCAGAGATCCCAAAGGTTATGTGGGT 114262 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535 ||||| || |||||| ||| | ||| |||||||||||||| || ||| | || ||| Sbjct 118974 TGGAATGCAGCACAAATACAGTTGTTGCGTGAAGGCAAAATGCATGGTTTTCTTCGTATG 118915 Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCA 135595 ||||||||||| ||||| |||| |||| | || | || | || ||| ||| || ||| Sbjct 118914 TATTGGGCAAAGAAGATCCTGGAGTGGTATTCAACACCCGAAGCGGCTCTAGAAACTGCA 118855 Query 135596 ATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 || | ||| |||||| | || ||||| ||||| ||| | || ||||| || ||| Sbjct 118854 ATTTCTTTAAATGATAAATATAGTTTGGATGGTTTAGATCCTAACGGCTATGTTGGT 118798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434721610296960