Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4 109 4e-19 seq15 86.0 4e-12 >seq4 Length=3596895 Score = 109 bits (120), Expect = 4e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| | || || || ||||| ||||| |||||||| || ||| |||| Sbjct 3259262 GACAAAGAAGGAATCCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAAGCAACTGGAA 3259321 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| ||||||||||||||||||||| || ||| || | ||||||||| | Sbjct 3259322 GACGGACGCACCTTGTCCGATTACAACATCCAGAAGGAGTCTACACTTCATTTGGTTCTT 3259381 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 3259382 CGTCTACGTGGTGGC 3259396 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||| || || || || ||| || || | || || ||| || Sbjct 3261067 ATGCAAATTTTCGTGAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTTGAACCATCC 3261126 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| || || |||||| || || || || ||||| |||| || || Sbjct 3261127 GACACCATAGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGATCAA 3261186 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || || ||||| || |||||||| |||| ||||| | |||| || |||||| Sbjct 3261187 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCAGACTACAAC 3261246 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| || ||| | || ||||| |||||||||||||| || Sbjct 3261247 ATTCAAAAGGAATCAACTCTTCACTTGGTATTGCGTTTGCGTGGTGG 3261293 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || ||||| |||| || || ||||| | || || ||||| || || ||||| Sbjct 3260932 GATAAGGAAGGCATTCCACCAGATCAACAACGTCTGATCTTCGCCGGTAAGCAGTTGGAA 3260991 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| |||| | |||||||||| |||||||| |||||| ||| | || ||||| ||| Sbjct 3260992 GACGGTCGCACCCTGTCCGATTATAACATCCAGAAAGAGTCTACTCTTCACTTGGTATTG 3261051 Query 28003 CGTTTGCGTGGCGG 28016 ||||||||||| || Sbjct 3261052 CGTTTGCGTGGTGG 3261065 >seq15 Length=2140121 Score = 86.0 bits (94), Expect = 4e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 |||||| ||||| |||||||| ||| | || || || || || || || || Sbjct 600369 GTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGACCAACAGCGTTTGATCTTC 600310 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 |||||||||||||| || || | |||| ||||||||| |||||||| ||||| ||| Sbjct 600309 GCCGGAAAACAATTAGAAGATGGTCGCACCTTGTCCGACTACAACATTCAAAAGGAGTCA 600250 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || | || |||||| ||||| | || || || Sbjct 600249 ACACTCCACTTGGTTCTGCGTCTTCGAGGTGG 600218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355705406631546