Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4 163 2e-35 seq138 161 7e-35 seq15 123 2e-23 >seq4 Length=3596895 Score = 163 bits (180), Expect = 2e-35 Identities = 166/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || ||| | || || || || |||||||| || ||||| | Sbjct 3259166 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 3259225 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || ||| |||||| | ||||| | || | || ||||||||||| | || ||||| Sbjct 3259226 TCCGATACTATTGAAAATGTTAAAGCTAAGA-TTCAAGACAAAGAAGGAATCCCCCCAGA 3259284 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| |||||||| |||||||| || ||||||||||||| |||||| || |||||| Sbjct 3259285 TCAACAACGTTTAATCTTTGCCGGTAAGCAACTGGAAGACGGACGCACCTTGTCCGATTA 3259344 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||| || || ||||| ||| | ||||| ||| Sbjct 3259345 CAACATCCAGAAGGAGTCTACACTTCATTTGGTT 3259378 Score = 147 bits (162), Expect = 1e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| | ||||||||||| |||||| | || ||||| | | Sbjct 3259397 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 3259456 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | |||||| || || ||||| | || |||||||| Sbjct 3259457 GATACTATTGAGAATGTCAAAGC-TAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCA 3259515 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || || |||||||| |||| || | |||||| | |||||| || Sbjct 3259516 ACAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGATTATAA 3259575 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || ||||| |||||||||||| || | ||||| || || Sbjct 3259576 TATTCAGAAGGAATCCACTTTACATTTAGTTCTACGCTTGCGTGGTGG 3259623 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||||||||| | ||||| ||||| || ||||| || ||||| | | Sbjct 3259625 ATGCAAATCTTCGTTAAAACATTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCC 3259684 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | ||| |||||| ||||| || ||| | || ||||||||| Sbjct 3259685 GATACAATTGAAAACGTTAAAGCCAAAATTCAGGACAAGGAGGGTATTCCTCCAGATCAA 3259744 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || ||||| || ||| |||| |||| ||| || || ||| |||||| Sbjct 3259745 CAACGTCTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGTACCTTGTCCGACTACAAC 3259804 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || | || ||||| | | ||||| || || Sbjct 3259805 ATCCAGAAGGAATCAACCCTCCACTTAGTCCTTCGCTTGCGTGGTGG 3259851 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || |||||||| || ||||| ||||| | |||||||| | | Sbjct 3261067 ATGCAAATTTTCGTGAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTTGAACCATCC 3261126 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| || || || || ||||| | || ||||||||| Sbjct 3261127 GACACCATAGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGATCAA 3261186 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || ||||| || ||| |||| |||| |||||| | || |||||| Sbjct 3261187 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCAGACTACAAC 3261246 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || || | || || || || | ||||| || || Sbjct 3261247 ATTCAAAAGGAATCAACTCTTCACTTGGTATTGCGTTTGCGTGGTGG 3261293 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || ||||| || ||||| || ||| | |||||||| | || Sbjct 3261295 ATGCAAATTTTCGTGAAGACACTCACCGGCAAAACTATTACTTTGGAAGTTGAGCCATCG 3261354 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| || ||| || || || || | || ||||||||| Sbjct 3261355 GACACAATTGAGAATGTAAAGGCTAAGATTCAAGATAAGGAGGGCATTCCACCAGATCAA 3261414 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || ||||| || ||||| || || | ||| ||||| ||| ||||| Sbjct 3261415 CAACGTCTGATCTTCGCCGGTAAGCAACTCGAGGATGGACGAACTTTGTCCGACTACAAT 3261474 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || || || ||| | ||||| || || | | || ||||| Sbjct 3261475 ATACAGAAGGAATCGACACTCCATTTGGTGCTACGTCTTCGCGGAGG 3261521 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || ||||| ||||| | ||||| || || | Sbjct 3260081 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260140 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| || |||| | || | | || || || || | || |||||||| Sbjct 3260141 GATACCATTGAGAACGTTAAGGCTAAGA-TCCAAGATAAGGAGGGAATTCCACCAGATCA 3260199 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || ||||||||||| ||||||||| |||||| | |||||| || Sbjct 3260200 ACAACGTTTGATCTTCGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGATTATAA 3260259 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 3260260 CATCCAGAAAGAGTCTAC 3260277 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || ||||| ||||| | ||||| || || | Sbjct 3260839 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260898 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| || |||| | || | | || || ||||| | || |||||||| Sbjct 3260899 GATACCATTGAGAACGTTAAGGCTAAGA-TCCAAGATAAGGAAGGCATTCCACCAGATCA 3260957 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || || ||||| || || ||||||||| ||||| | |||||| || Sbjct 3260958 ACAACGTCTGATCTTCGCCGGTAAGCAGTTGGAAGACGGTCGCACCCTGTCCGATTATAA 3261017 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || |||||||| || | || || || || | ||||| || || Sbjct 3261018 CATCCAGAAAGAGTCTACTCTTCACTTGGTATTGCGTTTGCGTGGTGG 3261065 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || ||||| || ||| | ||||| || | | Sbjct 3259853 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACTATTACTTTGGAAGTAGAGCCTTCA 3259912 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| || |||| | || | | || || || || | || |||||||| Sbjct 3259913 GATACCATTGAGAACGTTAAGGCTAAGA-TCCAAGATAAGGAGGGAATCCCACCAGATCA 3259971 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || ||||| || ||| |||| |||| |||||| | || ||||| Sbjct 3259972 ACAACGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCAGACTACAA 3260031 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || || || || | || ||||| | | ||||| || || Sbjct 3260032 CATTCAGAAGGAATCAACCCTCCACTTAGTCCTTCGCTTGCGTGGTGG 3260079 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || |||||||| || ||||| ||||| | |||||||| | | Sbjct 3260350 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACCATCACCTTGGAAGTTGAACCATCC 3260409 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | ||||| | ||| | || | | || || || || | || ||||||||| Sbjct 3260410 GACACCATAGAAATGTCAAAGCCAAGA-TCCAAGATAAGGAGGGATTCCCACCAGATCAA 3260468 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || ||||||| |||||| ||| | ||| || || ||| |||||| Sbjct 3260469 CAACG-TTGATCTTCGCCGGCA---AACTGG-AGATGGACG-AC-TTGTCCGACTACAAC 3260521 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || | || ||||| | | ||||| || || Sbjct 3260522 ATCCAGAAGGAATCAACCCTCCACTTAGTCCTTCGCTTGCGTGGTGG 3260568 >seq138 Length=433312 Score = 161 bits (178), Expect = 7e-35 Identities = 164/211 (78%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| |||||||| ||||| || || |||||||| || ||||| | | Sbjct 21528 AATGCAAATTTTCGTAAAAACCCTTACGGGCAAGACCATCACTCTTGAGGTTGAACCTTC 21587 Query 23670 GGACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| ||| ||||| || |||| | |||| || || || |||||| | |||||||||| Sbjct 21588 GGATACTATTGAACATGTTAAGGCCAAAA-TTCAAGATAAGGAAGGTATTCCGCCAGATC 21646 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||| |||| |||||||| ||||| |||| || | ||||| || | || || | Sbjct 21647 AACAGCGTCTAATTTTTGCCGGAAAACAGTTGGAGGATGGTCGCACATTGGCTGACTATA 21706 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 | || || |||||||| || ||||||||||| Sbjct 21707 ATATTCAGAAAGAGTCTACGTTACATTTAGT 21737 >seq15 Length=2140121 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| |||||| | || || || || ||||| | || || || | | Sbjct 600445 AATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTC 600386 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | ||| ||||| |||||||| ||| | || ||||| || Sbjct 600385 TGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGACCA 600326 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || || ||||| |||||| | ||||| | ||||| || ||| ||||| Sbjct 600325 ACAGCGTTTGATCTTCGCCGGAAAACAATTAGAAGATGGTCGCACCTTGTCCGACTACAA 600266 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| ||||| ||| | || || ||| Sbjct 600265 CATTCAAAAGGAGTCAACACTCCACTTGGTT 600235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337860482628584