Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq15 147 5e-30 seq4 134 3e-26 seq138 123 6e-23 seq36198 100 7e-16 seq2827 93.3 1e-13 seq2640 93.3 1e-13 seq1151 93.3 1e-13 >seq15 Length=2140121 Score = 147 bits (162), Expect = 5e-30 Identities = 168/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || | |||||| || || || ||||| | ||||| |||| ||| || Sbjct 600224 CGAAGACGCAGAACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGACAAGGTG 600283 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||||| || || || |||||||| | || |||||||| || || ||||| Sbjct 600284 CGACCATCTTCTAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGGATACCC 600343 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||||||||| ||| || || ||| |||||||||||| || | || || ||||| Sbjct 600344 TCTTTGTCTTGGAT-TTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAA 600402 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || || || ||||| | ||| | |||||| Sbjct 600403 GGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATT 600445 >seq4 Length=3596895 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||| || ||||| |||| || ||||||| || || | || ||||| | ||| Sbjct 3261042 GTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGACCGTCTTCCAACTG 3260983 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || |||||||| || |||||||| || || ||||| |||||||| ||||||||||| Sbjct 3260982 CTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCTTCCTTATCTTGGATCTT 3260923 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || || ||||| ||||||| || || || || ||||| || ||||| || Sbjct 3260922 AGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGTTTTGCCAGT 3260863 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | |||||| Sbjct 3260862 GAGGGTCTTCACGAAGATTTGCAT 3260839 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || | ||| ||||| || ||||| |||| || ||||||| || || Sbjct 3260302 ACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGT 3260243 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | ||| || || |||||||| | |||||||| || || ||||| || Sbjct 3260242 GCGTCCGTCTTCCAACTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCC 3260183 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||||||||| ||| || || ||||| ||||||| || || || || Sbjct 3260182 CTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAA 3260123 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| || | || || | ||| | |||||| Sbjct 3260122 GGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260081 Score = 113 bits (124), Expect = 1e-19 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||||||||| || || | ||| ||||||| || || | ||||| || | ||| || || Sbjct 3259594 AGTGGATTCCTTCTGAATATTATAATCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCC 3259535 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 |||||| || | |||||||| || || || || |||||||| ||||| || ||| |||| Sbjct 3259534 AGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAAT-TTTAGCTT 3259476 Query 225636 C-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 ||| || || || || || | || || || || ||||| || || |||||||||| Sbjct 3259475 TGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAG 3259416 Query 225695 TTTTTATGAACACTTGCAT 225713 |||| | ||| | ||||| Sbjct 3259415 TTTTGACGAAAATCTGCAT 3259397 Score = 104 bits (114), Expect = 6e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || ||||| || || | ||||| || | || || | || || Sbjct 3260064 AGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCC 3260005 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || |||||||| | |||||||| || || || || || ||||| ||| Sbjct 3260004 TCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCT 3259945 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || ||||| ||||| | || || || || || || || Sbjct 3259944 TGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGCTCTACTTCCAAAGTAATAGTT 3259885 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | |||||| Sbjct 3259884 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 3259853 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || ||||| || |||| ||||| |||| || || | || || Sbjct 3260822 AGGACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 3260763 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || |||||||| | |||||||| || || ||||| || ||||| ||| Sbjct 3260762 TCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCCTCCTTATCT 3260703 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA 225656 |||||||| ||| || || ||||| ||||| Sbjct 3260702 TGGATCTTAGCCTTAACGTTCTCAATGGTATCTGA 3260668 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/212 (70%), Gaps = 8/212 (4%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || ||||| || |||| ||||| |||| ||| || |||||| Sbjct 3260553 AGGACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAG--TCGTCCATCT 3260496 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 | | || || |||||||| | |||||||| || || || | || ||||| ||| Sbjct 3260495 CCA----GTTTGCCGGCGAAGATCAA-CGTTGTTGATCTGGTGGGAATCCCTCCTTATCT 3260441 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || ||| ||| |||||||| || | ||| || || || ||||| || Sbjct 3260440 TGGATCTTGGCTTTGACA-TTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATGGTT 3260382 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | || | |||||| Sbjct 3260381 TTACCGGTGAGGGTCTTCACAAAAATTTGCAT 3260350 >seq138 Length=433312 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || ||||| || | ||| || || ||||| || | ||||| || | ||| || || Sbjct 21725 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCCTCCAACTGTTTTCCG 21666 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || || || ||||| || ||||||||||||||||| ||||| || || ||| Sbjct 21665 GCAAAAATTAGACGCTGTTGATCTGGCGGAATACCTTCCTTATCTTGAATTTTGGCCTTA 21606 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||| || || || || | ||| || || | ||||| ||||||||||| | ||| Sbjct 21605 ACATGTTCAATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTT 21546 Query 225697 TTTATGAACACTTGCATT 225714 |||| ||| | ||||||| Sbjct 21545 TTTACGAAAATTTGCATT 21528 >seq36198 Length=15815 Score = 100 bits (110), Expect = 7e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| | || || || || || || || ||||| || | ||||| Sbjct 1575 CAAATTTATAATGTAATTGTAACTGCTCACGCTTTCGTAATAATTTTTTTCATAGTTATA 1634 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| || |||||||| | || || || ||| Sbjct 1635 CCTATTATAATCGGGGGGTTTGGAAATTGATTAGTCCCTTTAATATTAGGGGCACCAGAT 1694 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721 ||||| || || | | || |||||||| || || ||| |||| ||||| Sbjct 1695 ATGGCATTCCCCCGAATAAATAATATAAGATTCTGGTTATTACCCCCTTC 1744 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| || || || |||||||| ||||||||||| |||||||| || || ||||| | Sbjct 2151 ATACTTCTGGGTGTCCGAAAAATCAAAATAAATGTTGGTAAAGGATTGGGTCTCCTCCAC 2092 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 ||| ||| || |||||| |||||| | ||||| ||| ||||||| Sbjct 2091 CTGCTGGGTCGAAAAAGGAAGTATTCAGATTTCGATCTGTTAAAA 2047 >seq2827 Length=23245 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||| ||||||||||| ||||| || || || |||||||| | Sbjct 12445 TTCTGGATGTCCAAAAAATCAAAATAAATGTTGGTAAAGAATTGGGTCTCCTCCGCCGGC 12504 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 ||| || |||||| ||||| | ||||| || ||||||| Sbjct 12505 TGGGTCGAAAAAGGAGGTATTTAGATTTCGGTCTGTTAAAA 12545 Score = 84.2 bits (92), Expect = 5e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | ||||| || || | || || || || || || || ||||| || | ||||| Sbjct 13017 CAAATCTACAATGTAATCGTAACTGCTCACGCTTTCGTAATAATTTTTTTCATAGTTATA 12958 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||| | || || |||||| | || || || ||| Sbjct 12957 CCCATTATAATTGGAGGATTTGGAAATTGACTAGTCCCATTAATGCTGGGAGCGCCAGAT 12898 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 |||||||| || | | || |||||||| || | || ||| || Sbjct 12897 ATGGCTTTACCTCGAATAAATAATATAAGATTCTAATCACTGCC 12854 >seq2640 Length=25342 Score = 93.3 bits (102), Expect = 1e-13 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 370679 TGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCA 370738 ||||| |||||||||||||||| ||| ||||| || || || ||||| |||| |||||| Sbjct 18070 TGACCGAAAAATCAGAATAAATATTGGTAAAGAATTGGGTCTCCTCCACCTGCTGGATCG 18011 Query 370739 AAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 |||||| |||||| | ||||| || ||||||| Sbjct 18010 AAAAAGGAAGTATTTAGATTTCGGTCTGTTAAAA 17977 >seq1151 Length=65832 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || || |||||||| ||||||||||| ||||| || || || ||||| |||| Sbjct 23094 TTCTGGGTGTCCGAAAAATCAAAATAAATGTTGGTAAAGAATGGGGTCTCCTCCACCTGC 23153 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 |||||| |||||| |||||| | ||||| || ||||||| Sbjct 23154 TGGATCGAAAAAGGAAGTATTTAGATTTCGGTCTGTTAAAA 23194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191978119681412