Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 275 5e-69 >seq1 Length=5074932 Score = 275 bits (304), Expect = 5e-69 Identities = 496/720 (69%), Gaps = 20/720 (3%) Strand=Plus/Plus Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 |||||||| || ||||| |||||||| ||||| | ||| |||| || || || || Sbjct 4719465 ACAAGCAAACGATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAATTCATACCG 4719524 Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490 ||||| | || || | |||| || || || ||||| || || || || ||||||| Sbjct 4719525 ATTAAATTAACCGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACAGCTTCTGAA 4719584 Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 ||||| || ||| || ||| |||||| | || || | | |||| |||||| Sbjct 4719585 ATTATTTCAACAATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGGAACATTAAACAT 4719644 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 || || |||||||| | ||| || |||| || ||||| |||||||| || || || Sbjct 4719645 GCGAAGTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAATGTCAAGCCA 4719704 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||||||||| | || ||||||||||| || | ||||| ||| ||||| ||| Sbjct 4719705 GGCATTAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACTGAAGAAAATG 4719764 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTT----- 4725 ||||| || |||||||| || | || || || | || |||| | ||| Sbjct 4719765 CCTTCAACAGCGGCAAATGCAATTACACGTTCACCAA---AGTTGGC--CGACTTAGAAG 4719819 Query 4726 TAATCCATTTTAATGCCCAGTTAGCTTTTTTC-TTAACGCACGGAATTGTGTATATAGCG 4784 |||||| | |||||| | ||| || | ||| |||| || ||||| | |||||| Sbjct 4719820 AAATCCAAGCAAGTGCCCAATCAGCCTTACGCTTTACCGCA-GGCATTGTCTCAATAGCG 4719878 Query 4785 T----TAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 | ||| |||||| || |||| || || | |||||| || || |||| || || Sbjct 4719879 TTGAATAAGTAATTTCTTTGTTTCGAA----TCCTTAATATACGTATCAATTAATATACT 4719934 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 ||||||||||||||| | |||||| |||||||| |||||||| || ||||| | || || Sbjct 4719935 ATACATTTCAGAATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTC 4719994 Query 4901 TGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACT 4960 ||| ||||| ||||| | | || | ||| ||||| ||||| || || ||||| ||| Sbjct 4719995 TGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGA 4720054 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTT 5020 || || || || || || || || || || || | |||| | | | || | Sbjct 4720055 TGCGGCGAAGAAGGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGTGC 4720114 Query 5021 CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 ||| | || |||||||| | ||| ||||| ||||| ||||| ||||| ||||| || Sbjct 4720115 CCAATCATCCATATCTTTAGAAAGATCTACTTCCTCAACTGTCCAGAACGATGCTTCTGC 4720174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426861201463934