Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11 554 6e-153 seq1 282 6e-71 >seq11 Length=2963766 Score = 554 bits (614), Expect = 6e-153 Identities = 1246/1851 (67%), Gaps = 28/1851 (2%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 |||||||| || || | || ||||| |||||||| ||||| |||| ||||| || Sbjct 1983190 GCGGGTTTCGTGCGCAAGTAATACATGCCAGTTTTGAGACCTGCCTTCCAACCGTAAAAG 1983131 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || || |||||| ||| | || || || | || || || | |||||||||| Sbjct 1983130 TGTATAGAAGTAAGTTTGCCATAGTTTGGTTCAGCCACGTGTATGTTGAACGACTGACTT 1983071 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 |||||||||||||| || | ||| || |||||||| || ||| || || ||| ||| Sbjct 1983070 TGATCGATGAAAGCGCCACGATCTGCAGCCATTTTGATTGAGGTTTTCACAGAAATCTCC 1983011 Query 76983 CAAATAGTTTTGAA-AACTTGTTTGATATCATCTGGAA-GGTTTGTAT--TTTGAATGGA 77038 |||| ||||||| | || | | | |||| | ||| | || || || |||| || || Sbjct 1983010 CAAACAGTTTTGTATAAATCGCGT-ATATGCTGTGGTATGGATTCAATGTTTTGTATCGA 1982952 Query 77039 ACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAA 77098 || | | | |||||| |||| || |||||||||| |||||| | ||| |||| Sbjct 1982951 GCCGCGACTAGTTATAATATTATTTTTCATATCATCATCCCACAAACCCAACTCAGTTAG 1982892 Query 77099 AACTC-TAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGT 77157 | | | ||| || ||| |||| || | ||||||||| || || | || | || || | Sbjct 1982891 ATCGCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGGCGTGTAT 1982833 Query 77158 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAG 77217 | ||||| || |||||||| | || |||||||| |||| |||||| || || |||| Sbjct 1982832 AGATATTGGAAGTGTATGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAG 1982773 Query 77218 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTT 77277 |||||||||| || || | || ||| || | | |||||| | ||||| || | Sbjct 1982772 CAGTTGGCATGGGCGCAAGCAGCAAAGAGTTACGAACGCCATGTTGCTTAATTTTCTCCT 1982713 Query 77278 TTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAA 77337 | | | |||||| ||||||||| ||| |||||| | || || ||||||| Sbjct 1982712 TCAATTCGGTCCAATTCCAAAGATCACTTGGTGTCTTATCCCACATGTCATACTGTAGAA 1982653 Query 77338 TTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTT 77397 | || |||||| | ||| || |||||||||||||| || | | |||| |||| || Sbjct 1982652 TACCCTTACTAACGGGTGAACCTACATATGTTTCATAAGTGCCATATTTTTCGGCTAATT 1982593 Query 77398 CACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTT 77457 | ||||| | ||||| || || || ||||| |||||||| || | | ||| | Sbjct 1982592 CGCAACTGGATTCCAGCGCACCATAGTAAATAGTTTCGAATATTTGTTGATTTAAGCGGA 1982533 Query 77458 GTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAA 77517 ||||||| ||| || | |||||| | | | ||| || || || || || || || | Sbjct 1982532 ATGCTTCATCACTTTCGTATGGATAACGCATTAAAATTAAAGCGTCGGCAAAACCTTGTA 1982473 Query 77518 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAAT 77577 | |||||||| || || | |||||| ||| || | || || || || || ||||||| Sbjct 1982472 CGCCAATACCGATGGGACGATGTCTGAAATTCGATTTCTTTGCCTCCGGTATTGGATAAT 1982413 Query 77578 AATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTT 77637 |||||||||||| |||||||| | ||| | ||| || || || || || Sbjct 1982412 GATTAATGTCTATGATTTTATTCAAATTACGTGTAACGGTCTTGGTGACCTCTTTGAGGC 1982353 Query 77638 TAAGAAAATCAAA--TCTTC-CATCTATAACAAACATGTTCAAAGCTATAGATGCTAGAT 77694 ||| ||| | | ||| | | | |||||||||||||| || || || |||| | Sbjct 1982352 GCTTAAAGTCATACGTTTTCTCGGGTGTGACAAACATGTTCAATGCGATCGAAGCTAAGT 1982293 Query 77695 TACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTAC 77754 |||| || |||||||||| | | ||||| | || |||||||||| |||||||| Sbjct 1982292 TACACACAGCTACCTCATCGGGTGCCGAATATTCCACAATTTCGGTACATAAATTACTAC 1982233 Query 77755 ATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAA 77814 | || || ||||| | ||| || || || |||||| ||| || | || ||||| | | Sbjct 1982232 ACTTAATTGTGCCAACATTCTGCTGATTACTCTTTCGATTACAAGCATCTTTATATAACA 1982173 Query 77815 TAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCT 77873 | |||| || || || || | || ||||| ||||| | ||| | |||| | ||| Sbjct 1982172 TGTACGGTGTGCCAGTCTCTACTTGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCT 1982114 Query 77874 TTTATCAT-AGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTC 77932 |||| | | ||| | | || | || |||||||| ||| | |||||| || Sbjct 1982113 TTTACCTTCTTATTAGCA-CGTCCTTCCTGTTCATATTTCAGATACAATTTTTCAAACTC 1982055 Query 77933 ATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACC 77992 || ||||| || |||| || ||||| |||| | ||||||||| | |||||||| | Sbjct 1982054 CTCACCCCACACTTCATGTAAACCAGGACATTTGTGTGGGCACATTAGCGACCAGTCTTC 1981995 Query 77993 ATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 || | | || ||| ||||||| |||||||||||||| ||||| || | ||||| Sbjct 1981994 ATTGGCTTCGACACGTCTCATAAATAGATCAGGTATCCACAGAGCGTAGAACAAATCTCT 1981935 Query 78053 GGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGA 78112 || | || ||||| || || || || || || | ||| | ||| || | ||||||| Sbjct 1981934 GGCGCGGTGCTCTTCTTTACCGGTGTTTTTCTTCAAATCCAAAAATTCGAATATATCAGC 1981875 Query 78113 ATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTAT 78172 |||||||||||| || || || || | | || || |||||| || || ||||| | Sbjct 1981874 ATGCCATGGTTCCAGGTAGATGGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCCAC 1981815 Query 78173 ATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATT 78232 ||| | || ||||| | |||| || |||||| | | ||| || || || ||||| Sbjct 1981814 ATAACGTGCTACATTATTGAACACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCATT 1981755 Query 78233 TGTTCCAGAAATATAACTTCCACTTGCGCGAAT---AT-TACTAATGGATATCCCTATTC 78288 ||| || | ||| | | || | ||||| || || ||| || || || || | Sbjct 1981754 TGTGCCCGCAATCGCAGTGCCTTTCGCGCGTATGCAATGTAC--AT--TTAGACCAATAC 1981699 Query 78289 CTCCTGCCATCTTAGATATTAGAGCGCA---ACGTTTCAATGTATCGTAGATACCCTCTA 78345 | || || || || || | ||| || | || |||| | | ||||| || | Sbjct 1981698 CACCAGCAGATTTTGAAATCAAAGCACATTGATGTGCAGATGT---GAAAATACCGTCAA 1981642 Query 78346 TACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTG 78405 | || |||| |||| |||| | || || |||| ||| | || || | | Sbjct 1981641 TGGAATCGTCCACCATGGTAAGTAAGAAGCATGATGACAATTGCGGCTGTTTGGTGGCAG 1981582 Query 78406 CATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTT 78465 || || | |||||| || ||||| ||||| | || ||||| | |||||||||| Sbjct 1981581 CAGCGAAGAGTGTCGGCGAAGCATGTGTAAAATAACGCTCGGAAAGCAAGTTGTATGTTT 1981522 Query 78466 CAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCT 78525 |||| |||| || || || ||| || || | || || ||||| |||||||||| Sbjct 1981521 CAATTGCTGCATCGATATCTTCACCATGTATACCGATGGCAACGCGCATTAACATATGCT 1981462 Query 78526 GAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAA 78585 | |||| ||||| | || ||| | || | ||| || || ||| | ||||||| Sbjct 1981461 GTGGTCGCTCAACAATTTTGCCATTCAACTTGAGCAAATAGGAACGTTCAAGCGTTTTAA 1981402 Query 78586 AACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTA 78636 |||||||||| ||||| ||| || | || || || ||| |||| |||| Sbjct 1981401 AACCAAAATAATTGTAACCAAAATCGCGGTCATATATGATAGCAGAGTTTA 1981351 >seq1 Length=5074932 Score = 282 bits (312), Expect = 6e-71 Identities = 486/702 (69%), Gaps = 9/702 (1%) Strand=Plus/Plus Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 48034 ||| || || ||||| ||||| ||| | || ||||||||| || || | ||||| Sbjct 4719476 ATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAATTCATACCGATTAAATTAAC 4719535 Query 48035 TGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT--CGAT 48092 || | ||| || || | || ||||| || || || ||||| || ||||| | | Sbjct 4719536 CGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACAGCTTCTGAAATTATTTCAAC 4719595 Query 48093 GTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCA 48152 | | ||| | ||||||| | | |||||||| |||||||||||||| || ||| Sbjct 4719596 AATTCG--TTCATTACTTGGTTTTTGTATCAAATGTTGGAACATTAAACATGCGAAGTCA 4719653 Query 48153 CAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGT 48212 ||||| ||||| ||||||| |||| ||| ||||||||||| | || ||||||| Sbjct 4719654 CAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAATGTCAAGCCAGGCATTAAA 4719713 Query 48213 CCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACG 48272 || ||||| || |||||||| || | || ||| ||| ||||| |||||||| || Sbjct 4719714 CCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACTGAAGAAAATGCCTTCAACA 4719773 Query 48273 GCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC----TTCGTTGTGTATCCACCGTTG 48328 || |||||||| | | | || || | |||| || | | ||||| | Sbjct 4719774 GCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTAGAAGAA-ATCCAAGCAAG 4719832 Query 48329 TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 48388 ||||||||||||||| |||||| ||||||||| || ||||| || || | | || Sbjct 4719833 TGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTCAATAGCGTTGAATAAGTAATT 4719892 Query 48389 tttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAAT 48448 | ||| || ||| |||| || ||||| ||||| | |||||||||||| || || | Sbjct 4719893 TCTTTGTTTCGAATCCTTAATATACGTATCAATTAATATACTATACATTTCAGAATGCAC 4719952 Query 48449 ATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGT 48508 |||||| || || || |||||||| || || || | || ||||| | || || || Sbjct 4719953 ATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTAACTTGCACTTCTTG 4720012 Query 48509 ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAA 48568 | || |||||| | ||||| ||||| || || |||||| || || || || ||||| Sbjct 4720013 GCTGAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGATGCGGCGAAGAAGGCTAA 4720072 Query 48569 TACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTT 48628 || ||| ||| |||| | ||| || ||| || ||| |||| |||||||| Sbjct 4720073 CACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATATCTTT 4720132 Query 48629 TGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 || | ||||||||| ||| ||||||| || ||||| ||||| Sbjct 4720133 AGAAAGATCTACTTCCTCAACTGTCCAGAACGATGCTTCTGC 4720174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694354479734720