Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq11 513 2e-140 seq1 313 4e-80 >seq11 Length=2963766 Score = 513 bits (568), Expect = 2e-140 Identities = 1235/1847 (67%), Gaps = 20/1847 (1%) Strand=Plus/Minus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 || ||||| || || | || ||||| |||||||| ||||| |||| ||||| || Sbjct 1983190 GCGGGTTTCGTGCGCAAGTAATACATGCCAGTTTTGAGACCTGCCTTCCAACCGTAAAAG 1983131 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || || || |||||| ||| | || || || | || || || | |||||||||| Sbjct 1983130 TGTATAGAAGTAAGTTTGCCATAGTTTGGTTCAGCCACGTGTATGTTGAACGACTGACTT 1983071 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 |||||||||||||| || | ||| || |||||||| || ||| || || ||| ||| Sbjct 1983070 TGATCGATGAAAGCGCCACGATCTGCAGCCATTTTGATTGAGGTTTTCACAGAAATCTCC 1983011 Query 75578 CAAATAGTTTTGAA-AACTTGTTTGATATCATCTGGAA--GATTTG-TATTTTGAATGGA 75633 |||| ||||||| | || | | | |||| | ||| | |||| | ||||| || || Sbjct 1983010 CAAACAGTTTTGTATAAATCGCGT-ATATGCTGTGGTATGGATTCAATGTTTTGTATCGA 1982952 Query 75634 TCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA 75693 |||| | || |||||| |||| || || ||||||| |||||| ||| |||| Sbjct 1982951 GCCGCGACTAGTTATAATATTATTTTTCATATCATCATCCCACAAACCCAACTCAGTTAG 1982892 Query 75694 AACTC-TAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGT 75752 | | | ||| || ||| |||| |||| ||||||||| || || | || | || || | Sbjct 1982891 ATCGCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGGCGTGTAT 1982833 Query 75753 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAG 75812 | ||||| || |||||||| | || |||||||| |||| |||||| || ||||||| Sbjct 1982832 AGATATTGGAAGTGTATGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAG 1982773 Query 75813 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTT 75872 |||| ||||| || || | || ||| || | | |||||| | ||||| || | Sbjct 1982772 CAGTTGGCATGGGCGCAAGCAGCAAAGAGTTACGAACGCCATGTTGCTTAATTTTCTCCT 1982713 Query 75873 TTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAA 75932 | | | |||||| ||||||||| |||| |||||| | || || ||||||| Sbjct 1982712 TCAATTCGGTCCAATTCCAAAGATCACTTGGTGTCTTATCCCACATGTCATACTGTAGAA 1982653 Query 75933 TTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTT 75992 | || || ||| | ||| || ||||||||| ||||| || | ||||| |||| || Sbjct 1982652 TACCCTTACTAACGGGTGAACCTACATATGTTTCATAAGTGCCATATTTTTCGGCTAATT 1982593 Query 75993 CGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTT 76052 ||||||| | || | |||||| || ||||| |||||||| || | | ||| | Sbjct 1982592 CGCAACTGGATTCCAGCGCACCATAGTAAATAGTTTCGAATATTTGTTGATTTAAGCGGA 1982533 Query 76053 GCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAA 76112 |||||| ||| || | |||||| | | | ||| || || || || | || || | Sbjct 1982532 ATGCTTCATCACTTTCGTATGGATAACGCATTAAAATTAAAGCGTCGGCAAAACCTTGTA 1982473 Query 76113 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAAT 76172 | |||||||| || || | |||||| ||| || | | || || || || || |||| Sbjct 1982472 CGCCAATACCGATGGGACGATGTCTGAAATTCGATTTCTTTGCCTCCGGTATTGGATAAT 1982413 Query 76173 AATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTT 76232 |||||| ||||| |||||||| | ||| | ||| || || || || || Sbjct 1982412 GATTAATGTCTATGATTTTATTCAAATTACGTGTAACGGTCTTGGTGACCTCTTTGAGGC 1982353 Query 76233 TGAGAAAATCAAA--TTTTC-CATCTATCACAAACATATTAAGAGCTATAGATGCTAGAT 76289 ||| ||| | ||||| | | | |||||||| || | || || || |||| | Sbjct 1982352 GCTTAAAGTCATACGTTTTCTCGGGTGTGACAAACATGTTCAATGCGATCGAAGCTAAGT 1982293 Query 76290 TACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTAC 76349 |||| || |||||||||| | | ||||| | || || || |||| |||||||| Sbjct 1982292 TACACACAGCTACCTCATCGGGTGCCGAATATTCCACAATTTCGGTACATAAATTACTAC 1982233 Query 76350 ACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAA 76409 |||| || || |||| ||| || || || |||||| ||||| | || ||||| | | Sbjct 1982232 ACTTAATTGTGCCAACATTCTGCTGATTACTCTTTCGATTACAAGCATCTTTATATAACA 1982173 Query 76410 CAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCT 76468 |||| || ||||| || | || ||||| ||||| | ||| | |||| | ||| Sbjct 1982172 TGTACGGTGTGCCAGTCTCTACTTGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCT 1982114 Query 76469 TTTA--TTATAGATTTGTATCGCTTCTCTCT-TTCATATTGTGTATATAACCGTTCAAAT 76525 |||| || | ||| | | || | || || |||||||| ||| || |||||| Sbjct 1982113 TTTACCTTCT-TATTAGCA-CG-TCCTTCCTGTTCATATTTCAGATACAATTTTTCAAAC 1982057 Query 76526 TCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCA 76585 || || ||||| || |||| ||||||||||||| | || ||||| | ||||| || Sbjct 1982056 TCCTCACCCCACACTTCATGTAAACCAGGACATTTGTGTGGGCACATTAGCGACCAGTCT 1981997 Query 76586 CCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCT 76645 ||| | | || ||| ||||||| |||||||||||||| ||||| || | |||| Sbjct 1981996 TCATTGGCTTCGACACGTCTCATAAATAGATCAGGTATCCACAGAGCGTAGAACAAATCT 1981937 Query 76646 CGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCA 76705 | || | | ||||| || || || || || || | ||| | || || | |||||| Sbjct 1981936 CTGGCGCGGTGCTCTTCTTTACCGGTGTTTTTCTTCAAATCCAAAAATTCGAATATATCA 1981877 Query 76706 GAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCT 76765 | |||||||||||| || || || || | | || || |||||| || || ||||| Sbjct 1981876 GCATGCCATGGTTCCAGGTAGATGGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCC 1981817 Query 76766 ATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCA 76825 | ||| | || ||||| | |||| || |||||| | | || || || || ||| Sbjct 1981816 ACATAACGTGCTACATTATTGAACACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCA 1981757 Query 76826 TTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCT 76885 ||||| || | ||| | | || || || || | | | ||| || || || Sbjct 1981756 TTTGTGCCCGCAATCGCAGTGCCTTTCGCGCGTATGCAATGTACATTTAGACCAATACCA 1981697 Query 76886 CCTGCCATTTTAGAGATTAGAGCACAGCG-TTTCAATGTGTCATAGATGCCCTCTATACT 76944 || || ||| || || | |||||| | | | | ||| | | || || || || Sbjct 1981696 CCAGCAGATTTTGAAATCAAAGCACATTGATGTGCAGATGTGA-AAATACCGTCAATGGA 1981638 Query 76945 ATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATT 77004 ||| |||| |||| |||| | || || |||| ||| | || || | ||| Sbjct 1981637 ATCGTCCACCATGGTAAGTAAGAAGCATGATGACAATTGCGGCTGTTTGGTGGCAGCAGC 1981578 Query 77005 AAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAAT 77064 || | ||| || || ||||| || || | || ||||| | |||||||||||||| Sbjct 1981577 GAAGAGTGTCGGCGAAGCATGTGTAAAATAACGCTCGGAAAGCAAGTTGTATGTTTCAAT 1981518 Query 77065 AACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGG 77124 |||| || ||||| ||| || || | || || ||||| ||||||||||| || Sbjct 1981517 TGCTGCATCGATATCTTCACCATGTATACCGATGGCAACGCGCATTAACATATGCTGTGG 1981458 Query 77125 TCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACC 77184 ||| || ||| | || ||| | || | ||| || || ||| | ||||||||||| Sbjct 1981457 TCGCTCAACAATTTTGCCATTCAACTTGAGCAAATAGGAACGTTCAAGCGTTTTAAAACC 1981398 Query 77185 AAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTA 77231 |||||| ||||| ||| || | || || || ||| | || |||| Sbjct 1981397 AAAATAATTGTAACCAAAATCGCGGTCATATATGATAGCAGAGTTTA 1981351 >seq1 Length=5074932 Score = 313 bits (346), Expect = 4e-80 Identities = 489/699 (70%), Gaps = 3/699 (0%) Strand=Plus/Plus Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC 46523 ||| || || ||||| ||||| ||| | || ||||||||| || || | || || Sbjct 4719476 ATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAATTCATACCGATTAAATTAAC 4719535 Query 46524 CGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGATGT 46583 ||| | ||| || || | || ||||| ||||| || ||||| || || ||||| Sbjct 4719536 CGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACAGCTTCTGAAATTATTTCAAC 4719595 Query 46584 TACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCACA 46643 | | ||| | ||||||| || |||||||||| |||||||||||||| || ||||| Sbjct 4719596 AATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGGAACATTAAACATGCGAAGTCACA 4719655 Query 46644 ATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCC 46703 ||| || || ||||||| |||| ||| ||||||||||| | |||||||||| || Sbjct 4719656 ATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAATGTCAAGCCAGGCATTAAACC 4719715 Query 46704 ACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGC 46763 || || || |||||||| || | || ||| ||| ||||| |||||||| ||||| Sbjct 4719716 GCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACTGAAGAAAATGCCTTCAACAGC 4719775 Query 46764 CGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGC 46820 || ||||| | | | || || | |||| ||| | ||||| | || Sbjct 4719776 GGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTAGAAGAAATCCAAGCAAGTGC 4719835 Query 46821 CCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 46880 |||||||||||| |||||| ||||||||| || ||||| || || | | ||| | Sbjct 4719836 CCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTCAATAGCGTTGAATAAGTAATTTCT 4719895 Query 46881 ttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTT 46940 || | ||| |||| ||| ||||| ||||| | |||||||||||| ||||| | || Sbjct 4719896 TTGTTTCGAATCCTTAATATACGTATCAATTAATATACTATACATTTCAGAATGCACATT 4719955 Query 46941 TTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACA 47000 ||| ||||| || |||||||| || || || | ||| || |||| || || ||| | Sbjct 4719956 TTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTAACTTGCACTTCTTGGCT 4720015 Query 47001 AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATAC 47060 || |||||| ||||| |||||||| || |||||| || || || || || || || Sbjct 4720016 GAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGATGCGGCGAAGAAGGCTAACAC 4720075 Query 47061 ATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGA 47120 ||| ||| |||| | ||||| ||| || ||| |||| |||||||| || Sbjct 4720076 GTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATATCTTTAGA 4720135 Query 47121 TATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 | ||||||||| ||| |||||||||| || || ||||| Sbjct 4720136 AAGATCTACTTCCTCAACTGTCCAGAACGATGCTTCTGC 4720174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712611815007360