Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4 120 7e-22 seq15 104 5e-17 seq138 91.5 3e-13 >seq4 Length=3596895 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||||||||| |||||||| ||||||| | || | || ||||| | Sbjct 3260287 CAAG-TGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGTCCGTCTTCCA 3260229 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||||||||| | | || || || | | ||||| ||||| ||||| | Sbjct 3260228 ACTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCCTCCTTATCTTGGA 3260169 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || |||| | | | ||||| ||||||||| | || || ||||||| Sbjct 3260168 TCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGTTTTGC 3260109 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||||||||||| ||||| Sbjct 3260108 CAGTGAGGGTCTTCACGAAGATTTGCAT 3260081 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||||||||| |||||||| ||||||| | || | || ||||| | Sbjct 3261045 CAAG-TGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGACCGTCTTCCA 3260987 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||||||||| || | || || || | | || |||||||| ||||| | Sbjct 3260986 ACTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCTTCCTTATCTTGGA 3260927 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || |||| | | | ||||| ||||||||| | || || ||||||| Sbjct 3260926 TCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGTTTTGC 3260867 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||||||||||| ||||| Sbjct 3260866 CAGTGAGGGTCTTCACGAAGATTTGCAT 3260839 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| || || || || || || || ||||| |||| ||||||| ||||| Sbjct 3261506 AGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTTCGTCCATCC 3261447 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | || || || | | || || ||||| ||| Sbjct 3261446 TCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCCTCCTTATCT 3261387 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| |||| | |||| || ||| ||||| | |||||||||| Sbjct 3261386 TGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAACTTCCAAAGTAATAGTT 3261327 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||||||||| | ||||| Sbjct 3261326 TTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 3261295 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| |||||||| || |||||||||||||||| || || | || ||| Sbjct 3259380 AGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCT 3259321 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| | | || || || | | ||||||||| || ||| Sbjct 3259320 TCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCT 3259261 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||| ||| | || | | || || || || || ||||| || || Sbjct 3259260 TGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTC 3259201 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || | ||||||||||||| |||||||| Sbjct 3259200 TTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 3259166 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || || || || || || || |||||||| || | | || | || || Sbjct 3260064 AGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCC 3260005 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || ||||||||||| | | || || || | | |||||| ||||| ||| Sbjct 3260004 TCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCT 3259945 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | | |||||| ||||||||| | |||||||||| Sbjct 3259944 TGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGCTCTACTTCCAAAGTAATAGTT 3259885 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||||||||||| ||||| Sbjct 3259884 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 3259853 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | ||| || || || || || || ||||||| | || | ||||| Sbjct 3259608 AGAACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGACAGTGTGCGTCCATCC 3259549 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || ||||| || | | || || || | | |||||||||||| ||| Sbjct 3259548 TCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 3259489 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||||||| |||| | | || ||| ||| || || | ||| || ||| Sbjct 3259488 TGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTT 3259429 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| | ||| || ||||| | |||||| Sbjct 3259428 TTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 3259397 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| || || ||||| |||||||| || | | || | || || || | Sbjct 3261273 CAAG-TGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCCTCCA 3261215 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||||||||| | | || || || | | || |||||||| || || | Sbjct 3261214 ATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCCTTATCCTGGA 3261155 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||||| | |||| | |||| || || ||||| | || || ||||||| Sbjct 3261154 TCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATGGTTTTGC 3261095 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||||||||| | ||||| Sbjct 3261094 CGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 84.2 bits (92), Expect = 5e-11 Identities = 149/212 (70%), Gaps = 8/212 (4%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || || || || || || ||||||||||| |||| | | || ||||| Sbjct 3260553 AGGACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGG--ACAAGTCGTCCATC- 3260497 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||||||||| | | | || || || | | || ||| ||||| ||| Sbjct 3260496 TCCAG---TTTGCCGGCGAAGATCAACGT-TGTTGATCTGGTGGGAATCCCTCCTTATCT 3260441 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||||| | |||| | |||| || || ||||| | || || ||| Sbjct 3260440 TGGATCTTGGCTTTGACA-TTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATGGTT 3260382 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| |||||||| || | ||||| Sbjct 3260381 TTACCGGTGAGGGTCTTCACAAAAATTTGCAT 3260350 >seq15 Length=2140121 Score = 104 bits (114), Expect = 5e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| ||||| |||||||| |||| || || | |||||||||| Sbjct 600238 CAAG-TGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGACAAGGTGCGACCATCTTCTA 600296 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||||||||| | | ||| ||||| | | ||| || || || ||||| | Sbjct 600297 ATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGGATACCCTCTTTGTCTTGGA 600356 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||||||| | || | | |||| ||| ||| || || | || || || || | Sbjct 600357 TTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTCTTAC 600416 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || | || || ||||| | ||||||| Sbjct 600417 CAGTTAAGGTTTTGACGAAAATCTGCATT 600445 >seq138 Length=433312 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | ||||||||||| || || || || || || || || | ||||| Sbjct 21740 AGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCC 21681 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| ||||| || || || | ||| || || | || || |||||||| ||| Sbjct 21680 TCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGAATACCTTCCTTATCT 21621 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || ||| || | | || ||| || || |||||||| || || Sbjct 21620 TGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTC 21561 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || || || ||||| | |||||| Sbjct 21560 TTGCCCGTAAGGGTTTTTACGAAAATTTGCATT 21528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153285673056858