Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq138 107 2e-18 seq4 107 2e-18 >seq138 Length=433312 Score = 107 bits (118), Expect = 2e-18 Identities = 181/260 (70%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 111083 TTTATAAGA--GTTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTAC 111140 ||| ||||| ||| | |||||||||||| || ||||| | || ||||| ||||| || Sbjct 21510 TTTGTAAGATTGTTCAGCAATGCAAATTTTCGTAAAAACCCTTACGGGCAAGACCATCAC 21569 Query 111141 CGTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGA 111200 | || ||||| ||| || ||| || || || |||||| || || || Sbjct 21570 TCTTGAGGTTGAACCTTCGGATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGA 21629 Query 111201 AGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAA 111260 ||| |||| |||||||| | || |||| ||| || ||||| ||||| ||| | Sbjct 21630 AGGTATTCCGCCAGATCAACAGCGTCTAATTTTTGCCGGAAAACAGTTGGAGGATGGTCG 21689 Query 111261 AACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCG 111320 || |||| || |||||||| || ||||| ||||| |||||||||| | ||||| | Sbjct 21690 CACATTGGCTGACTATAATATTCAGAAAGAGTCTACGTTACATTTAGTCCTTCGTCTTAG 21749 Query 111321 CGGTGGCAATAAATAAACGT 111340 |||||| ||| |||||| Sbjct 21750 AGGTGGC-GCAAAGAAACGT 21768 >seq4 Length=3596895 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| |||||||| ||||| || |||||||| || |||| || || | Sbjct 3259397 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 3259456 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| |||||| || || ||||| | ||| |||||| Sbjct 3259457 GATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 3259516 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | |||| || |||||||| ||||| ||| || || ||||||||||| Sbjct 3259517 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGATTATAAT 3259576 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| || |||||||||| | || |||| ||||| Sbjct 3259577 ATTCAGAAGGAATCCACTTTACATTTAGTTCTACGCTTGCGTGGTGG 3259623 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 ||||||||||| || || || || ||||| ||||| ||||| || |||| ||||| Sbjct 3259166 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 3259225 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 |||| || ||| | || ||| || ||| ||||||||||| | ||| ||| Sbjct 3259226 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 3259285 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 |||||| | | || | ||| || || ||| ||||||| || || ||||||| Sbjct 3259286 CAACAACGTTTAATCTTTGCCGGTAAGCAACTGGAAGACGGACGCACCTTGTCCGATTAC 3259345 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || |||||||| ||||| || | ||||| || ||||||| Sbjct 3259346 AACATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGGCA 3259397 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || || || | ||||||||||| ||||| ||||| || || Sbjct 3261295 ATGCAAATTTTCGTGAAGACACTCACCGGCAAAACTATTACTTTGGAAGTTGAGCCATCG 3261354 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | ||||| || ||| || || || ||| |||| |||||| Sbjct 3261355 GACACAATTGAGAATGTAAAGGCTAAGATTCAAGATAAGGAGGGCATTCCACCAGATCAA 3261414 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | || || | || || || ||| | || ||| |||| || |||| || ||| Sbjct 3261415 CAACGTCTGATCTTCGCCGGTAAGCAACTCGAGGATGGACGAACTTTGTCCGACTACAAT 3261474 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 ||||| || ||||| ||||| ||||| ||| | ||||| ||||| ||| Sbjct 3261475 ATACAGAAGGAATCGACACTCCATTTGGTGCTACGTCTTCGCGGAGGC 3261522 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || || || || | || ||||||||||| ||| ||||| || ||| Sbjct 3260839 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260898 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || || || || || |||||| |||| |||||| Sbjct 3260899 GATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCACCAGATCAA 3260958 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | || || | || || || || |||||||| | || || |||||||||| Sbjct 3260959 CAACGTCTGATCTTCGCCGGTAAGCAGTTGGAAGACGGTCGCACCCTGTCCGATTATAAC 3261018 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| ||||| || || || || |||||| |||| ||||| Sbjct 3261019 ATCCAGAAAGAGTCTACTCTTCACTTGGTATTGCGTTTGCGTGGTGG 3261065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421625112452848