Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4 138 8e-28 >seq4 Length=3596895 Score = 138 bits (152), Expect = 8e-28 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| |||||| || ||| || |||||||| || Sbjct 3261072 TTGCATACCACCACGCAAACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATA 3261013 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| || ||| |||| |||| |||||| ||||| ||||||| ||| || ||||| Sbjct 3261012 ATCGGACAGGGTGCGACCGTCTTCCAACTGCTTACCGGCGAAGATCAGACGTTGTTGATC 3260953 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | |||||||| || ||||| ||| || |||| | ||||| || | || Sbjct 3260952 TGGTGGAATGCCTTCCTTATCTTGGATCTTAGCCTT-AACGTTCTCAATGGTATCTGAGG 3260894 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || || || || |||||||||||||||||||||||||| Sbjct 3260893 GCTCTACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260839 Score = 138 bits (152), Expect = 8e-28 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| |||||| || |||||||| |||||||| Sbjct 3261300 TTGCATACCACCACGCAAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTA 3261241 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| |||| |||| ||||| ||||| ||||||||||| || ||||| Sbjct 3261240 GTCTGACAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATC 3261181 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | |||||||| ||| ||||| || | || |||||||||||| | Sbjct 3261180 TGGGGGAATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGG 3261121 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| || || || || || ||||||||||||||||| |||||||| Sbjct 3261120 TTCAACTTCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 134 bits (148), Expect = 1e-26 Identities = 175/238 (74%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || || | || | ||| |||| |||||| || ||| || |||||||| Sbjct 3260317 TATTTGCATACCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTT 3260258 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||||||| || ||| |||| |||| ||| || ||||| ||||||||||| || || Sbjct 3260257 ATAATCGGACAGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCGAAGATCAAACGTTGTTG 3260198 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGG 44279 ||||| || | || ||||| || ||||| ||| || |||| | ||||| || | Sbjct 3260197 ATCTGGTGGAATTCCCTCCTTATCTTGGATCTTAGCCTT-AACGTTCTCAATGGTATCTG 3260139 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||| || || || || || |||||||||||||||||||||||||| Sbjct 3260138 AGGGCTCTACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260081 Score = 132 bits (146), Expect = 3e-26 Identities = 159/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||||| || |||||| |||||||||||||||| | || || || |||| || Sbjct 3259377 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTG-CGTCCGTCTTC 3259319 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||| ||||| ||||||||||| ||||| || ||||||| || | ||||| || || Sbjct 3259318 CAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTG 3259259 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| || || | || || |||| | ||| ||||||| || || |||| Sbjct 3259258 AATCTTA-GCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCT 3259200 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | ||||||||||||||||||||| Sbjct 3259199 TGCCAGTCAAGGTCTTCACGAAGATTTGCAT 3259169 Score = 113 bits (124), Expect = 3e-20 Identities = 144/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||| ||||||||||| |||| | || | || |||| |||| ||||| ||||| || Sbjct 3259815 TCCTTCTGGATGTTGTAGTCGGACAAGGTA-CGTCCGTCCTCCAATTGCTTACCGGCGAA 3259757 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||| ||| || ||||||| ||| | ||| ||||| ||| || || |||| || || Sbjct 3259756 GATCAGACGTTGTTGATCTGGAGGAATACCCTCCTTGTCCTGAATTTTG-GCTTTAACGT 3259698 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | || || |||| | ||| ||||||| ||||| || || ||||| | || || | Sbjct 3259697 TTTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTTTTACCCGTCAATGTTTTAA 3259638 Query 44325 CGAAGATTTGCAT 44337 ||||||||||||| Sbjct 3259637 CGAAGATTTGCAT 3259625 Score = 109 bits (120), Expect = 4e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| || |||||||| || | || ||| |||| |||| ||||| ||||| ||| Sbjct 3260043 TCCTTCTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAG 3259984 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| || ||||||| || | || ||||| || ||||| ||| || ||| Sbjct 3259983 ATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCTTGGATCTTAGCCTT-AACGTT 3259925 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | ||||| || | | || || |||| ||||| || || || || ||||||||||| Sbjct 3259924 CTCAATGGTATCTGAAGGCTCTACTTCCAAAGTAATAGTTTTGCCAGTCAGGGTCTTCAC 3259865 Query 44326 GAAGATTTGCAT 44337 |||||||||||| Sbjct 3259864 GAAGATTTGCAT 3259853 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/192 (72%), Gaps = 10/192 (5%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||| ||||||||||| |||| | ||| | | || ||||| | | ||||| || Sbjct 3260532 TCCTTCTGGATGTTGTAGTCGGACAAGTCGTCCATC----TCCAGTT---TGCCGGCGAA 3260480 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| || || ||||||| || | || ||||| || ||||| |||| | | Sbjct 3260479 GATCAA-CGTTGTTGATCTGGTGGGAATCCCTCCTTATCTTGGATCTTG-GCTTTGACAT 3260422 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||||||| | ||| || |||| || || || || || |||||||||||||| Sbjct 3260421 TTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATGGTTTTACCGGTGAGGGTCTTCAC 3260362 Query 44326 GAAGATTTGCAT 44337 || |||||||| Sbjct 3260361 AAAAATTTGCAT 3260350 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 ||||| || || ||||| |||| | ||| || | || || || ||||| ||||| | Sbjct 3261485 TCCTTCTGTATATTGTAGTCGGACAAAGTT--CGTCCATCCTCGAGTTGCTTACCGGCGA 3261428 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 |||||| ||| || ||||||| || | || ||||| || ||||| ||| | Sbjct 3261427 AGATCAGACGTTGTTGATCTGGTGGAATGCCCTCCTTATCTTGAATCTTAGCCTTTACAT 3261368 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | || ||||| | | || || |||| ||||| || || || ||||| ||||||| Sbjct 3261367 TCTCAATTGTGTCCGATGGCTCAACTTCCAAAGTAATAGTTTTGCCGGTGAGTGTCTTCA 3261308 Query 44325 CGAAGATTTGCAT 44337 |||| |||||||| Sbjct 3261307 CGAAAATTTGCAT 3261295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359831585510166