Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 147 5e-30 seq15 136 1e-26 seq138 93.3 1e-13 >seq4 Length=3596895 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| || ||||| |||||| | || || || |||||| Sbjct 3260084 CAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCAGAT 3260143 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| || || || || ||||| || || || || ||| Sbjct 3260144 ACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATTCCACCAGATCAACAA 3260203 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| |||||| | ||||| ||| | || || ||||||||||| || Sbjct 3260204 CGTTTGATCTTCGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGATTATAACATC 3260263 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || ||||| || || || || | || ||| | ||| Sbjct 3260264 CAGAAAGAGTCTACTCTTCACTTGGTATTGCGTCTC 3260299 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| || ||||| |||||| | || || || |||||| Sbjct 3260842 CAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCAGAT 3260901 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| || || || ||||| || || || || || ||| Sbjct 3260902 ACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCACCAGATCAACAA 3260961 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||| | ||||| || | || || ||||||||||| || Sbjct 3260962 CGTCTGATCTTCGCCGGTAAGCAGTTGGAAGACGGTCGCACCCTGTCCGATTATAACATC 3261021 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 3261022 CAGAAAGAGTCTACTCTTCA-CTTG 3261045 Score = 134 bits (148), Expect = 3e-26 Identities = 162/217 (75%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| |||||||| || | || || || || ||||| || ||||| ||| Sbjct 3259166 AAAATGC---AAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAA 3259222 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || || ||| |||||||| ||||||||||||||||| || Sbjct 3259223 CCATCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCA 3259282 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093 || || ||||| | ||||| ||||| || || || ||||| ||| | || |||| |||| Sbjct 3259283 GATCAACAACGTTTAATCTTTGCCGGTAAGCAACTGGAAGACGGACGCAC-CTTGTCCGA 3259341 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 ||| ||| |||| || || || ||||| ||| | ||| Sbjct 3259342 TTACAACATCCAGAAGGAGTCTACACTTCATTTGGTT 3259378 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || ||||| || ||||| |||||| | || || ||| || ||| Sbjct 3261070 CAAATTTTCGTGAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTTGAACCATCCGAC 3261129 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| ||||| ||||| || ||||| || || || || || ||| Sbjct 3261130 ACCATAGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGATCAACAA 3261189 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || || | || || ||| | || || | || || ||| | Sbjct 3261190 CGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCAGACTACAACATT 3261249 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| |||||||| || || |||| Sbjct 3261250 CAAAAGGAATCAACTCTTCA-CTTG 3261273 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||| | || |||||||| ||||| | ||||| || || || Sbjct 3259400 CAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCCGAT 3259459 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| |||||| || ||||| || || ||||||||||| || || || ||| Sbjct 3259460 ACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAACAA 3259519 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || |||||| | || |||||| | || || |||||||||| | Sbjct 3259520 CGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGATTATAATATT 3259579 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || | ||| | ||| Sbjct 3259580 CAGAAGGAATCCACTTTACATTTAGTT 3259606 Score = 122 bits (134), Expect = 2e-22 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || || ||||| || || || ||||| ||| || || Sbjct 3259628 CAAATCTTCGTTAAAACATTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCCGAT 3259687 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| || ||||||||||| || || || ||||| || || ||| Sbjct 3259688 ACAATTGAAAACGTTAAAGCCAAAATTCAGGACAAGGAGGGTATTCCTCCAGATCAACAA 3259747 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || ||||||||||| || || | || || ||| | || |||| |||| || ||| | Sbjct 3259748 CGTCTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGTAC-CTTGTCCGACTACAACAT 3259806 Query 178103 CCAAAAAGAATCAACACTGCA 178123 ||| || |||||||| || || Sbjct 3259807 CCAGAAGGAATCAACCCTCCA 3259827 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || ||||| || ||||| || || | || || || || ||| Sbjct 3261298 CAAATTTTCGTGAAGACACTCACCGGCAAAACTATTACTTTGGAAGTTGAGCCATCGGAC 3261357 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||| || || || || || || || || || ||| Sbjct 3261358 ACAATTGAGAATGTAAAGGCTAAGATTCAAGATAAGGAGGGCATTCCACCAGATCAACAA 3261417 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || || ||||| |||||| | ||| | |||| || || | Sbjct 3261418 CGTCTGATCTTCGCCGGTAAGCAACTCGAGGATGGACGAACTTTGTCCGACTACAATATA 3261477 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || ||||| ||||| ||| Sbjct 3261478 CAGAAGGAATCGACACTCCAT 3261498 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || || || ||||| || || | || || || ||||| Sbjct 3259856 CAAATCTTCGTGAAGACCCTGACTGGCAAAACTATTACTTTGGAAGTAGAGCCTTCAGAT 3259915 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| || || || || |||||||| || || || ||| Sbjct 3259916 ACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCAACAA 3259975 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || || | || || ||| | || || | || || ||| | Sbjct 3259976 CGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCAGACTACAACATT 3260035 Query 178104 CAAAAAGAATCAACACTGCA 178123 || || |||||||| || || Sbjct 3260036 CAGAAGGAATCAACCCTCCA 3260055 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 ||||| ||||| |||||||| || ||||| || || || || ||||| || || || Sbjct 3260668 TCAGATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATTCCACCAGAT 3260727 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 || ||||| | ||||||||||| || || | || || ||| | || || |||| || Sbjct 3260728 CAACAACGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCCGACTAC 3260787 Query 178098 AACGTCCAAAAAGAATCAACACTGCA 178123 ||| |||| || |||||||| || || Sbjct 3260788 AACATCCAGAAGGAATCAACCCTCCA 3260813 >seq15 Length=2140121 Score = 136 bits (150), Expect = 1e-26 Identities = 158/209 (76%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| | || || || || |||||| | ||||| || || ||| Sbjct 600441 CAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTCTGAC 600382 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| || || || |||||||| || ||||| || ||||| || Sbjct 600381 ACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGACCAACAG 600322 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||||||||||||||| | |||||||| | || |||| |||| || ||| | Sbjct 600321 CGTTTGATCTTCGCCGGAAAACAATTAGAAGATGGTCGCAC-CTTGTCCGACTACAACAT 600263 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || |||||||| || |||| || Sbjct 600262 TCAAAAGGAGTCAACACTCCA-CTTGGTT 600235 >seq138 Length=433312 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || || || ||||| || ||||| ||| || || Sbjct 21532 CAAATTTTCGTAAAAACCCTTACGGGCAAGACCATCACTCTTGAGGTTGAACCTTCGGAT 21591 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | || || || ||||| || || ||||| || || || || || || Sbjct 21592 ACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGTATTCCGCCAGATCAACAG 21651 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || |||||||||||| | || ||||| | || | || || ||||| | Sbjct 21652 CGTCTAATTTTTGCCGGAAAACAGTTGGAGGATGGTCGCACATTGGCTGACTATAATATT 21711 Query 178104 CAAAAAGAATCAAC 178117 || ||||| || || Sbjct 21712 CAGAAAGAGTCTAC 21725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203172925268412