Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4 114 1e-20 seq15 93.3 4e-14 >seq4 Length=3596895 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||| ||||| |||||||| | ||| || |||| || | ||||| |||||||| Sbjct 3259815 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCCAATTGCTTACCGGCGAAG 3259756 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 ||||| || ||||| || | |||| | |||||||||| ||| |||| |||| |||| Sbjct 3259755 ATCAGACGTTGTTGATCTGGAGGAATACCCTCCTTGTCC-TGAATTTTGGCTTTAACGTT 3259697 Query 41792 GACACA-GTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || || ||| | || ||||||| || || ||||||||||||| || || || Sbjct 3259696 TTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTTTTACCCGTCAATGTTTTAAC 3259637 Query 41851 GAAAATCTGCAT 41862 ||| || ||||| Sbjct 3259636 GAAGATTTGCAT 3259625 Score = 102 bits (112), Expect = 8e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||||||||| ||||| ||||| || ||||| | || || | ||| ||||| ||||| Sbjct 3259587 TCCTTCTGAATATTATAATCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAA 3259528 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GA 41790 |||| || ||||| || | ||| | | ||||| | | ||| |||| |||| || Sbjct 3259527 ATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 3259469 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||| ||| | ||| ||||||| || || ||||| ||||||| || || || Sbjct 3259468 CTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGAC 3259409 Query 41851 GAAAATCTGCATG 41863 ||||||||||||| Sbjct 3259408 GAAAATCTGCATG 3259396 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || || ||| ||||| |||||||| ||||| Sbjct 3260307 CCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGAC 3260248 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || | ||| ||||||||||| |||| || ||||| || | ||| Sbjct 3260247 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGA 3260188 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| | | || | || || | |||| | | || || | ||| || Sbjct 3260187 ATTCCCTCCTTAT-CTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTAC 3260129 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||| || || || ||||| ||||| || ||||| Sbjct 3260128 TTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260081 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||||||||| ||||| || |||||||| |||| || | ||||| |||||||| Sbjct 3260043 TCCTTCTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAG 3259984 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-A 41790 |||| || ||||| || | || | | |||||| | | || | || || | |||| Sbjct 3259983 ATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTAT-CTTGGATCTTAGCCTTAACGTT 3259925 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | || || | ||| || |||| || || ||||| || ||||| ||||| || Sbjct 3259924 CTCAATGGTATCTGAAGGCTCTACTTCCAAAGTAATAGTTTTGCCAGTCAGGGTCTTCAC 3259865 Query 41851 GAAAATCTGCAT 41862 ||| || ||||| Sbjct 3259864 GAAGATTTGCAT 3259853 >seq15 Length=2140121 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || |||||| |||||||| |||||||| Sbjct 600218 CCACCTCGAAGACGCAGAACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAC 600277 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || | || || |||||||| |||| ||||||||||| | ||| Sbjct 600278 AAGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGG 600337 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||| | || |||| |||| || | | ||||| | ||| || Sbjct 600338 ATACCCTCTTTGT-CTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGAC 600396 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || ||||| || | || || |||||||||||||| Sbjct 600397 CTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 600444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462094818997600