Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2312 154 3e-32 seq23396 93.3 9e-14 seq55 93.3 9e-14 seq601 91.5 3e-13 seq60 91.5 3e-13 seq5883 89.7 1e-12 >seq2312 Length=53118 Score = 154 bits (170), Expect = 3e-32 Identities = 307/449 (68%), Gaps = 22/449 (5%) Strand=Plus/Plus Query 281573 AATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGGGAT 281632 ||| || || |||||||| || ||||||||| | |||||| ||||||| | || || Sbjct 32125 AATCTTTGTGGACCAACCTGTGCCAATACCATCAGCACCATTCACCAAAACCATTGGTAT 32184 Query 281633 AATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATCATACAAATACTTCAGAAG 281692 ||| |||| ||| || | ||||||||| || | |||||||||| ||||| | | Sbjct 32185 AATTGGTATATACCACTGTGGTTCAATCTTTTGACCATCATCA-------ACTTC-GTAC 32236 Query 281693 GTTATCATCTGTATCGACG---------AAAACCTGTCGCGTCTTAGGGTT-CAGTTTCG 281742 |||| || | | |||| || || | |||||||| ||||| || | | Sbjct 32237 GTTAACAACGG-ATCGTCGGCTGGGTGGAATATGAGTCGCGTCA-AGGGTGACATTAAGG 32294 Query 281743 TGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGAC 281802 |||| ||||| | || ||||| ||||||||||||||||| | | ||||| |||| Sbjct 32295 TGAAAATATAACGAGCGCTCGCACAATCTTTACCACCCTGCAGACGTGTACCAAATTGAC 32354 Query 281803 CCTCCGGCAACAACCAGTTAATGTTA-TTGCTCCCGACGTAATCCTGAGCCAGGTTGACG 281861 | ||| ||| | ||||| ||| ||| |||| ||||||| || |||| ||||| Sbjct 32355 CACGAGGCTCCAATAAATTAATATTATTTGATCCC-ACGTAATTTTGCGCCAAATTGACT 32413 Query 281862 ATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCA 281921 || || |||| || || | ||| ||||| || |||||| ||| || ||| ||||| Sbjct 32414 ATGGTAGCCTGCAGTGACATCTCGCCGTGATGGTAGGCGGACATTTCAGCCACAGAACCA 32473 Query 281922 CTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAATATAATACT 281981 || || || || ||||| || | | ||| ||||||||| | | | | ||| Sbjct 32474 GACAATTGCGCAACTTTCACCTCACGTTTGTCGTTACGTTTGAAACAGGTAAACATAACT 32533 Query 281982 TTTCGTTGAGAAGGCTTGAAACCATCAAC 282010 || ||||| ||||| |||||||| || Sbjct 32534 TTGCGTTGGCCCGGCTTAAAACCATCTAC 32562 >seq23396 Length=1259 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 387 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 446 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 447 GCCCCACGTTGGGC 460 >seq55 Length=530491 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 216650 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 216591 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 216590 GCCCCACGTTGGGC 216577 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 221951 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 221892 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 221891 CCCCACGTTGGGC 221879 >seq601 Length=129108 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 33083 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 33142 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 33143 CCCCACGTTGGGC 33155 >seq60 Length=511764 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 329175 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 329116 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 329115 CCCCACGTTGGGC 329103 >seq5883 Length=22155 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 20298 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 20357 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 20358 CCCACGTTGGGC 20369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057390834294800