Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq225 224 1e-53 seq892 98.7 1e-15 >seq225 Length=233467 Score = 224 bits (248), Expect = 1e-53 Identities = 414/603 (69%), Gaps = 12/603 (2%) Strand=Plus/Minus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 ||| || |||||||| ||||| | | |||||| || ||| ||||| || || | | || Sbjct 26879 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 26820 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917 ||| | ||| || || || ||| ||||| || ||| ||||| ||| || | | Sbjct 26819 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 26760 Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977 || ||| || | ||| | ||| | | ||||| ||||||| ||||||||| || || Sbjct 26759 AATTCGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCACA 26700 Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037 ||| | |||||| |||| || ||||| || ||||||||||| || ||||| || Sbjct 26699 ATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAACC 26640 Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGA 17097 |||||||| | ||| || |||| || || ||| ||||| ||||| || |||| Sbjct 26639 ACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTCAACGGC 26580 Query 17098 TGCAAACGCGATTAATCGTTCGGCGTACGTCG-CGTCTTTGTTACG-AATCCATTTCTGC 17155 ||||| || |||| ||||| | | | | || ||| | | | |||||| || Sbjct 26579 AGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCG--AGGAAATCCAAGCAAGC 26522 Query 17156 ACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCT----TAAATAATTT 17211 |||| || || || |||||| | | ||| || ||||| || | ||| ||||| Sbjct 26521 GCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGTAATTC 26462 Query 17212 CTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTG 17271 || | |||| ||| | ||||| ||||| || | || ||| |||||||| || || Sbjct 26461 CTTTGTTTC----GAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATG 26406 Query 17272 TATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 | |||||||| || || |||||||| || ||||| || || || | | ||| ||||| Sbjct 26405 CACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTC 26346 Query 17332 CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 | | |||| ||||| ||| |||||| ||||| || || || ||||||||||| || Sbjct 26345 CTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGC 26286 Query 17392 CAA 17394 || Sbjct 26285 TAA 26283 >seq892 Length=101496 Score = 98.7 bits (108), Expect = 1e-15 Identities = 182/261 (70%), Gaps = 12/261 (5%) Strand=Plus/Minus Query 119950 CCATTCCAGTAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACG 120009 ||| |||||||| ||||| ||||| |||||||| | | ||||||||||| |||||||| Sbjct 64796 CCACTCCAGTATCTTTTTTGCCCAATACATACGCAGAAAACCATGCATTTTGCCTTCACG 64737 Query 120010 AACCATTTGAAGTTGTGCGGCGTTCCATAAGGGATCGTGTGTACGGGCGTGTTCTAAACT 120069 | || ||| |||||||| |||||||||| ||||| || || || || || ||||| Sbjct 64736 TAACAATTGCAGTTGTGCTGCGTTCCATAGATCGTCGTGGGTGCGAGCCTGCTC-AAACT 64678 Query 120070 ATACGTATCGTATAGATAGGGTCGAG----TATCCCGTCGATGTTCGTCTAACGTACGTA 120125 | || || || ||| |||| |||| ||||| || ||||| || Sbjct 64677 CCGCCAAT-GTGTAAGAAGG--CGAGCGCTTATCTTTGCGATGGTCTTCTAAGGTTTTAG 64621 Query 120126 AAGCCCACGGATGCGTCGACGTAATAGA--ATCGTATCGTTTATTATAATAACAAAAGTT 120183 ||||| | || || | | |||| ||||| ||| ||||||||| || || || Sbjct 64620 CTGCCCAAGCAT--GTAAGCCTTTTAGACTGTCGTAGTGTTCATTATAATAGCAGAAATT 64563 Query 120184 ATCGGATAATTCCCGTCGTAC 120204 ||| | |||||| |||| ||| Sbjct 64562 ATCTGCTAATTCACGTCTTAC 64542 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 ||||| || ||||||| || | |||||||| ||||| |||||||| || || Sbjct 69677 CCCACATAACCGTTGGAGTCTCTGCCATCTAAACTATATTTGTCGTTTAAATAAATTGCA 69618 Query 119921 ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATA 119980 | | ||| ||| || | | | |||||| ||||| ||||| ||||| ||| || Sbjct 69617 ATTTCCAGCGCCTCTTCTGGTGAGTTGGACCATTCAAGTATCTTTTTGGCCCAATACTTA 69558 Query 119981 CGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAAG 120040 || | |||| |||||||| ||||||||||||| ||| | ||| || || ||||| | | Sbjct 69557 CGAAGAAATCCGTGCATTTTGCCTTCACGAACCAGTTGTATTTGAGCAGCATTCCAGAGG 69498 Query 120041 GGATCGTGTGTACGGGCGTGTTCTAA 120066 ||| |||||| || ||||| || Sbjct 69497 TCATCATGTGTATTTGCTTGTTCAAA 69472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517338840532800