Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq291 477 1e-129 seq225 280 2e-70 >seq291 Length=196152 Score = 477 bits (528), Expect = 1e-129 Identities = 1245/1861 (67%), Gaps = 51/1861 (3%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||||||||| | ||| ||||| || || || ||||| |||| ||||| ||| Sbjct 78018 GCTGGTTTCGTACGCAAATAATACATGCCAGTCTTGAGACCTGCCTTCCAGCCGTAGAAA 77959 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || ||| || || || ||| | || || || | || || || | || ||||| Sbjct 77958 TGTATAGAAGTGAGCTTACCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTC 77899 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGGAATTTC 53007 ||||||||||| || || | |||||||||||||| || ||| || || | ||| || Sbjct 77898 TGATCGATGAATGCACCACGATCTGCAGCCATTTTGATCGAT-GTTTTCACGGAAATCTC 77840 Query 53008 CCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG-AAGGTTT--GTATTCTGAATAG 53063 ||||| |||||| || | |||| | || | | ||| | || || |||| || || | Sbjct 77839 CCAAACAGTTTTGTATAGATCGCGT-ATGTGCTGTGGTATGGATTCAATATTTTGTATGG 77781 Query 53064 ATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTC-TCTCGGTT 53122 |||| | | ||||| ||||||| || ||||||| ||| | | ||||||| Sbjct 77780 ATCCGCGACTGGTTATAATATTATTCTTCATATCATCATCCCACAGNACCCAACTCGGTT 77721 Query 53123 AAAACTC-TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 53181 | | | | ||| || || |||| || ||||||||||| || || | || | || || Sbjct 77720 AGATCGCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGT 77662 Query 53182 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 53241 |||||||| || |||||||| | |||||||| || |||| |||||| || ||||| Sbjct 77661 ATAAATATTGGAAGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGA 77602 Query 53242 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTT--CTGATTTTA 53299 ||||| ||||| || || | || ||| || | | ||| ||||| | ||||| Sbjct 77601 AGCAGTTGGCATGGGCGCAAGCAGCAAAGAGTTGCGGACACC--ATGTTGCTTTATTTTC 77544 Query 53300 TCTTTTA--GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTT 53357 || || | ||| ||||||||||||||| | ||| | Sbjct 77543 TCCTTCAATTCGGT--CCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACT 77486 Query 53358 GTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAG 53417 |||||||||| ||||| || || ||| ||| || || || | || | || |||| Sbjct 77485 GTAGAATACCCTTACTAACGGGTGAACCTTTATACGTTTCATAGGTGCCATAGTTTTCAG 77426 Query 53418 CTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA 53477 ||| ||| ||||| || || || || || || ||||| |||||||| || | || ||| | Sbjct 77425 CTAATTCGCAACTGGCTTCCAAGGCGCCATAGTAAATAGTTTCGAATATTTGCTGATTCA 77366 Query 53478 GATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 53537 | |||||| || || |||| ||| | ||||| || ||||| || || | Sbjct 77365 AACGGAATGCTTCTTCACTTTCGTATGGGTAACGCATTAGAATTAAAGCGTCGGCAAAAC 77306 Query 53538 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC--AGCTTCTGGAAT 53595 |||| | |||||||| || || | |||||| ||| |||||| || || || | Sbjct 77305 CTTGTATGCCAATACCAATGGGACGATGTCTGAAATT--CGATTTCCTTGCCTCCGGCAA 77248 Query 53596 AGGATAATAATTAATATCTATAATTTTATTGAGGTTTC-TGACAATTACTTTGACCACAT 53654 ||||||| |||||| ||||| |||||||| || || | || | ||||| || | Sbjct 77247 GGGATAATGATTAATGTCTATGATTTTATTCAGATTACGTGTAACGGTCTTTG-TGACTT 77189 Query 53655 CCTTCAGTTTGAGAAAATCAAA--TTGTC-CATCTATTACAAACATGTTCAATGCAATAG 53711 | || || ||| ||| | || || | | | |||||||| ||||| || || | Sbjct 77188 CTTTGAGGCGCTTAAAGTCATACGTTTTCTCGGGTGTGACAAACATATTCAAGGCGATCG 77129 Query 53712 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 53771 | |||| || || || |||||||||| | || ||||| | || || || || | Sbjct 77128 AAGCCAAGTTGCACACAGCTACCTCATCGGGTGACGAATATTCCACAATTTCGGTACATA 77069 Query 53772 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 53831 |||||||||||| || || || | ||| ||||||||||||||| ||||| ||||| | Sbjct 77068 AATTACTACACTTAATTGTGCCAACATTCTGTTGATTACTCTTTCGATTACAAGCATCTT 77009 Query 53832 TATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGA 53891 |||| | ||| |||| || || || || | || ||||| ||||| ||| | | || Sbjct 77008 TATACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAAT-GCTAAACCAAAGA 76950 Query 53892 C-ACGAGCCTTTATTAT-AGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCG 53949 | | || |||||| | ||| | | || || || ||| ||| ||| || Sbjct 76949 CTTTGTGCTTTTATTTTCTTATTGGCACGTCCTTCCT-GTTCATATTTCAGATATAACTT 76891 Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||| ||||| || ||||| || | | || || ||||| | | |||||||| | ||| Sbjct 76890 TTCGAACTCTTCACCCCATACTTCATGTAAACCGGGACACTTGTGTGGACACATTAGCGA 76831 Query 54010 CCACTCTCCGTCATC--CTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 ||| ||| ||||| |||| || ||||||||||| |||||||| ||||| | || || Sbjct 76830 CCAGTCT---TCATCGGCTTCTACACGTTTCATAAATAGATCAGGTATCCATA-AGGCAT 76775 Query 54067 A-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 54125 | || | |||||||| | ||| || || || || || || ||||| | || | || Sbjct 76774 AGAACAAATCTCTGGCGCGATGCTCTTCTTTGCCAGTGTTTTTTTTCAATTCCAAAAATT 76715 Query 54126 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTC 54185 | | |||||||| |||||| ||||||| ||| |||| | | || || ||||| | Sbjct 76714 CGAAAATATCAGCATGCCATGGTTCCAGGTAGATGGCAAAGGCGCCTGGTCGTTTACCGC 76655 Query 54186 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 54245 | || ||||| | || | || | ||||| | |||| |||||| || | | ||||| Sbjct 76654 CACCTTGATCCACATAGCGTGCTATATTATTGAACACTCGCAACATAGGCACCAAACCAT 76595 Query 54246 TGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAAT---AT-TACTAAT 54300 | |||| | ||| || ||| | | || | || | ||||| || || ||| | Sbjct 76594 TTGATGTGCTATTTGTACCCACAATTGCAG-TGCCTTTTGCACGTATGCAATGTAC--GT 76538 Query 54301 TGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCG-TTTTAACGTATCAT 54359 | ||||| || || || || ||| || || ||||| ||| | | | | | | | Sbjct 76537 T--CAGACCAATACCGCCAGCAGATTTGGAAATCAATGCACATTGATGTGCAGATGTGA- 76481 Query 54360 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 54419 | || || || || ||| |||| |||| | |||||||| || |||| ||| | Sbjct 76480 AAATACCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAATTGCGGCT 76421 Query 54420 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 54479 | |||| | ||| || | || |||||||| || ||||| | ||| ||||| | Sbjct 76420 GCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGTGTAAAATAACGTTCGGAAAGCA 76361 Query 54480 GATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 54539 ||||| || ||||| |||| || || || ||| || || | || ||||||| Sbjct 76360 AGTTGTAAGTTTCGATTGCTGCATCGATGTCTTCGCCATGTATACCGATGGCAACACGCA 76301 Query 54540 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTT 54599 ||||||| ||||| |||| ||||| || ||| ||| | ||| ||||| ||||| || Sbjct 76300 TTAACATATGCTGTGGTCGCTCAACAATTTTGCCGTTCAATTTTAGCAAATAGGAACGTT 76241 Query 54600 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659 | | ||||||||||||||||| || || ||| || || | |||||||| | |||| Sbjct 76240 CAAGCGTTTTAAAACCAAAATAATTATAACCAAAATCGCGGGCATAAATAATGGCAGAGT 76181 Query 54660 T 54660 | Sbjct 76180 T 76180 Score = 89.7 bits (98), Expect = 6e-13 Identities = 195/286 (68%), Gaps = 7/286 (2%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||||||||| | ||| ||||| || || || ||||| |||| ||||| ||| Sbjct 85094 GCTGGTTTCGTACGCAAATAATACATGCCAGTCTTGAGACCTGCCTTCCAGCCGTAGAAA 85035 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || ||| || || || ||| | || || || | || || || | || ||||| Sbjct 85034 TGTATAGAAGTGAGCTTACCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTC 84975 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGGAATTTC 53007 ||||||||||| || || | |||||||||||||| || ||| || || | ||| || Sbjct 84974 TGATCGATGAATGCACCACGATCTGCAGCCATTTTGATCGAT-GTTTTCACGGAAATCTC 84916 Query 53008 CCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATAG 53063 ||||| ||||| || | |||| | || | | ||| | | | |||| || || | Sbjct 84915 CCAAACTGTTTTGTATAGATCGCGT-ATGTGCTGTGGTATGCATTCAATATTTTGTATGG 84857 Query 53064 ATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAA 53109 |||| | | ||||| ||||||| || ||||||| ||| || Sbjct 84856 ATCCGCGACTGGTTATAATATTATTCTTCATATCATCATCCCACAA 84811 >seq225 Length=233467 Score = 280 bits (310), Expect = 2e-70 Identities = 396/554 (71%), Gaps = 3/554 (1%) Strand=Plus/Minus Query 24116 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 24175 |||||||| ||||||||||||||||| || || || || ||||| |||| ||||| Sbjct 26732 TAAATGTTGGAACATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAG 26673 Query 24176 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 24235 ||| |||||||| || | || ||||||| ||||| || |||||||| || || || || Sbjct 26672 TTCATTGGAAAATGTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGC 26613 Query 24236 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA 24295 ||| ||| |||||||| ||||| || || ||||| ||||| | | ||| ||| | Sbjct 26612 AAAACTGCCACTGAAGAAAATACCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAA 26553 Query 24296 ACCGGCG--CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 ||| || | | | |||| | |||||||| ||||| ||||| ||| Sbjct 26552 GTTGGCCGACTTCGAGGAAATCCAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGG 26493 Query 24353 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 24412 |||||||||||||||||| || | || || ||| || || |||| ||||||||| Sbjct 26492 CATTGTCTCTATAGCATTGAATAAGTAATTCCTTTGTTTCGAGTCCTTAATATATGTATC 26433 Query 24413 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 ||| || | ||||||||||| ||||| | || || || || ||||||||||| ||||| Sbjct 26432 AATTAATATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAA 26373 Query 24473 ACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCAC 24532 || | ||||| || | || ||||| || || ||||| ||| |||||||||||| Sbjct 26372 GCAACGTGCCTCTGTCACTTGGACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCAC 26313 Query 24533 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 24592 || || ||| || || ||||| || || || ||| ||||||| | ||| | Sbjct 26312 AATACCATCAGATGCGGCGAAAAAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATC 26253 Query 24593 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 24652 ||||| |||||||| ||||||||||| | ||| ||||| | |||||||| || Sbjct 26252 AGTTAGACGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCCCTACTGTCCAGAA 26193 Query 24653 TGATGCCTCTGCCT 24666 ||||| ||||||| Sbjct 26192 CGATGCTTCTGCCT 26179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593484408220800