Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq225 176 5e-39 seq609 114 1e-20 seq749 113 5e-20 >seq225 Length=233467 Score = 176 bits (194), Expect = 5e-39 Identities = 373/554 (67%), Gaps = 2/554 (0%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || ||||||||||| || | ||| || || || || || || | | || | Sbjct 26179 AGGCAGAAGCATCGTTCTGGACAGTAGGGGAAGTAGATCTTTCTAAAGATATGGATGATT 26238 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 ||| || | | || || || || ||||| || |||||| | ||||||||||||| Sbjct 26239 GGGCACGTCTAACTGATAATGAACGACATTTTATTTCACACGTGTTAGCCTTTTTCGCCG 26298 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 | || || || || || || ||| | || || || ||| ||||| || || ||| Sbjct 26299 CATCTGATGGTATTGTGAATGAAAATGTAGTTGAACGCTTCTGCCAGGAAGTCCAAGTGA 26358 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | ||||| || |||||||| || ||||| || || |||||||| ||||| || ||||||| Sbjct 26359 CAGAGGCACGTTGCTTCTATGGATTTCAAATTGCGATGGAGAATGTGCATTCTGAAATGT 26418 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954 || | | || || || || | ||| | | | | || || || | Sbjct 26419 ATAGCATATTAATTGATACATATATTAAGGACTCGAAACAAAGGAATTACTTATTCAATG 26478 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 | || ||||| ||||| ||| |||| | ||||| || |||||||| ||||| || Sbjct 26479 CTATAGAGACAATGCC-TGCCGTAAAGCGTAAGGCAGATTGGGCGCTTGCTTGGATTTCC 26537 Query 117014 GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTC 117073 | |||| ||| || || || | | || || || ||||| || || | ||| Sbjct 26538 TCGAAGTCGGCCAACTTTGGTGAACGTGTAATTGCATTTGCTGCCGTTGAAGGTATTTTC 26597 Query 117074 TTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133 || |||||||| || | || || ||||| |||||||| || | ||||| ||| || Sbjct 26598 TTCAGTGGCAGTTTTGCTTCGATCTTCTGGCTTAAGAAACGTGGTTTAATGCCAGGCTTG 26657 Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTG 117193 || || ||| || || || || | || ||||| || ||||| ||||| || |||||| Sbjct 26658 ACATTTTCCAATGAACTAATTTCACGAGATGAGGGACTTCATTGTGACTTCGCATGTTTG 26717 Query 117194 CTGTTCAAGCATTT 117207 ||||| | ||||| Sbjct 26718 ATGTTCCAACATTT 26731 >seq609 Length=128410 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||| | || || || ||||||||| | || ||||| | Sbjct 92741 AAAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCT 92800 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | ||| |||| | ||||| | ||||||||||| |||||| | || Sbjct 92801 TCTGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGAT 92860 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || || | |||| ||| || ||||| |||| || | || ||| | ||||||| Sbjct 92861 CAACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGTACCTTGTCCGACTAC 92920 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| |||||| | || || ||| | || |||| Sbjct 92921 AACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCG 92958 >seq749 Length=113903 Score = 113 bits (124), Expect = 5e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || | || ||||| |||||||| | || || ||| | Sbjct 1169 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 1110 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||| | | ||| | || | || |||| |||||||| || |||||| | || Sbjct 1109 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 1050 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| | |||| || || ||||| ||||| |||| ||||| || ||| ||| Sbjct 1049 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTAC 990 Query 40867 AACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||||||||| | || || ||| Sbjct 989 AACATCCAGAAGGAGTCTACACTTCAT 963 Score = 111 bits (122), Expect = 2e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| ||||||||||| ||| | || || ||| | | Sbjct 255 AATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATTACCTTGGANGTTGAACCTTC 196 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | |||| | |||| || || | || || || ||||| ||| | || | Sbjct 195 AGATACCATTGAGAACGTT-AAGGCTAAGATCCAAGATAAGGAAGGCATTCCCCCAGATC 137 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| | |||| ||| |||||||| |||| |||| || ||| | ||| |||| Sbjct 136 AGCAACGTTTGATCTTCGCCGGCAAACAATTGGAGGACGGACGTACCTTGTCCGATTACA 77 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||| || ||| | || || || | || ||||| Sbjct 76 ACATCCAAAAAGAGTCTACTCTTCACTTGGTATTGCG 40 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || ||||| |||||||||||||| | || || || | | Sbjct 482 ATGCAAATCTTCGTAAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTTGAGCCTTCA 423 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | || || ||||| || || | || || Sbjct 422 GATACCATTGAGAACG-TAAAGGCCAAGATCCAAGATAAGGAGGGTATTCCTCCAGATCA 364 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| ||| || || || |||| |||| ||||| | ||||||||| Sbjct 363 ACAACGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAA 304 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || || || | || ||||| Sbjct 303 CATCCAGAAGGAGTCTACTCTTCACTTGGTATTGCG 268 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | ||||| ||||||||||| | || || || | || Sbjct 938 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 879 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| | ||||||| || || || || |||||| | || || Sbjct 878 GATACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 819 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | ||| ||||||||| |||| || | ||||| || |||||| || Sbjct 818 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 759 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT 40907 || || ||||| |||| || ||| |||| | ||||| Sbjct 758 ATTCAAAAGGAATCCACTCTACATTTAGTTCTACGCTT 721 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | ||||| ||||| || || | || || ||| | || Sbjct 710 ATGCAAATCTTCGTTAAAACTTTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCC 651 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | ||| ||||| ||| ||||| ||||| || || | || || Sbjct 650 GATACAATTGAAAACGTTAAAGCAAAAA-TTCAGGACAAGGAGGGTATTCCTCCAGATCA 592 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| ||| || || || |||| |||| || ||| | ||| ||||| Sbjct 591 ACAACGTTTAATCTTCGCCGGTAAGCAATTGGAAGACGGACGTACCTTGTCCGATTACAA 532 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| ||||| | || || || | || ||||| Sbjct 531 CATCCAAAAGGAATCTACTCTTCACTTGGTATTGCG 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515013369929600