Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq157 163 4e-35 seq2732 147 3e-30 seq749 136 6e-27 seq609 102 1e-16 >seq157 Length=290505 Score = 163 bits (180), Expect = 4e-35 Identities = 313/456 (69%), Gaps = 9/456 (2%) Strand=Plus/Minus Query 205359 TAATTGtttttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATG 205418 ||| |||| ||||||| | | |||||||||| ||| | |||||||| || | | | || Sbjct 145065 TAACTGTTCTTTTAATGCTTCAATATGATTATTATAGACATGTGCATCGCCCAAAGTGTG 145006 Query 205419 AATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATA 205478 | ||| || |||| | || ||| | ||| ||||||||||| || | ||| || Sbjct 145005 GACAAAATCCCCTGGTCGGAGATCAGTAATATGAGCAATCATATAGGTAAGCAAAGCGTA 144946 Query 205479 ACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACA 205538 |||| ||||||||||||||| || |||||||| || | ||| || | ||||| Sbjct 144945 CGAGGCAATATTAAATGGTACACCCAATCCCATATCGGCACTGCGTTGGTATAATTGAC- 144887 Query 205539 TGTAAGATATTTAT-TATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAA 205597 |||||| || | ||| ||| ||||||| ||| ||||||||||||||||| | Sbjct 144886 ---AAGATAATTCTCCATTGGCAACAAAAAATTGTGCAAGACAATGACAAGGTGGTAGAG 144830 Query 205598 CCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtt 205657 |||| | | ||| | ||||||||| || | | ||| ||| | | | || | Sbjct 144829 CCATTTGAGGGATATCGACAGGATTCCAAGCAGACATTATAATACGCCGATCATTTGGAT 144770 Query 205658 tattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAA-TTT 205716 | ||| | ||| | | || | || | |||||| | || | || | | ||| | | Sbjct 144769 TGTTTCTGATTGTGTCAATTACTTGCTGAAGTTGATCTATACCCTCATCTTTGTAACTGT 144710 Query 205717 GTATCCA-TATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACC 205775 | || | || | || || || |||||||||||||| ||||||||||||||||| || Sbjct 144709 CCTTGCAGTTTC--TGTACTTGGCCCCAAAATGACGCCACTGAAAACCATAAACTGGGCC 144652 Query 205776 TAAATCACCTTCTTTTCTATCATTAAAACCACGTTT 205811 || ||||||||| | ||||| ||| |||| ||| Sbjct 144651 TAGATCACCTTCCTCCCTATCGGAAAACCCACATTT 144616 >seq2732 Length=47336 Score = 147 bits (162), Expect = 3e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 124537 CAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 ||||||||||||| |||| || || || || || || || ||| | ||| |||| | Sbjct 1834 CAATGCAAATATTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTT 1775 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| || | || |||||||||||||| ||||| || || ||||||| Sbjct 1774 CGGATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGATC 1715 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| | || |||||||| ||||| ||||| || ||| |||| ||||| | || |||| Sbjct 1714 AACAGCGTCTAATTTTTGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATA 1655 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||||| ||||| || || |||||||| || | ||| | ||||||| Sbjct 1654 ATATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGG 1606 >seq749 Length=113903 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || || ||||| || ||| | ||| |||| | Sbjct 938 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 879 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| |||||||||||||| ||||| || || || |||||| Sbjct 878 GATACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 819 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || ||||| || |||||| | || ||| | || |||||| Sbjct 818 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 759 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| ||| | ||||| ||| |||| ||||| |||||||| Sbjct 758 ATTCAAAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGGTAT 709 >seq609 Length=128410 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || |||| || || || || || ||||| | || | Sbjct 92743 AATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTC 92802 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| ||||| ||||| ||||| ||||| || || ||||| Sbjct 92803 TGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGATCA 92862 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || || ||||||||||| || ||| |||| || || || || || Sbjct 92863 ACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGTACCTTGTCCGACTACAA 92922 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | ||||||||| | ||| | || |||||||| Sbjct 92923 CATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGGTAT 92973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755154195328000