Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21]
31,960 sequences; 519,005,690 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq157 163 4e-35
seq2732 147 3e-30
seq749 136 6e-27
seq609 102 1e-16
>seq157
Length=290505
Score = 163 bits (180), Expect = 4e-35
Identities = 313/456 (69%), Gaps = 9/456 (2%)
Strand=Plus/Minus
Query 205359 TAATTGtttttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATG 205418
||| |||| ||||||| | | |||||||||| ||| | |||||||| || | | | ||
Sbjct 145065 TAACTGTTCTTTTAATGCTTCAATATGATTATTATAGACATGTGCATCGCCCAAAGTGTG 145006
Query 205419 AATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATA 205478
| ||| || |||| | || ||| | ||| ||||||||||| || | ||| ||
Sbjct 145005 GACAAAATCCCCTGGTCGGAGATCAGTAATATGAGCAATCATATAGGTAAGCAAAGCGTA 144946
Query 205479 ACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACA 205538
|||| ||||||||||||||| || |||||||| || | ||| || | |||||
Sbjct 144945 CGAGGCAATATTAAATGGTACACCCAATCCCATATCGGCACTGCGTTGGTATAATTGAC- 144887
Query 205539 TGTAAGATATTTAT-TATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAA 205597
|||||| || | ||| ||| ||||||| ||| ||||||||||||||||| |
Sbjct 144886 ---AAGATAATTCTCCATTGGCAACAAAAAATTGTGCAAGACAATGACAAGGTGGTAGAG 144830
Query 205598 CCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtt 205657
|||| | | ||| | ||||||||| || | | ||| ||| | | | || |
Sbjct 144829 CCATTTGAGGGATATCGACAGGATTCCAAGCAGACATTATAATACGCCGATCATTTGGAT 144770
Query 205658 tattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAA-TTT 205716
| ||| | ||| | | || | || | |||||| | || | || | | ||| | |
Sbjct 144769 TGTTTCTGATTGTGTCAATTACTTGCTGAAGTTGATCTATACCCTCATCTTTGTAACTGT 144710
Query 205717 GTATCCA-TATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACC 205775
| || | || | || || || |||||||||||||| ||||||||||||||||| ||
Sbjct 144709 CCTTGCAGTTTC--TGTACTTGGCCCCAAAATGACGCCACTGAAAACCATAAACTGGGCC 144652
Query 205776 TAAATCACCTTCTTTTCTATCATTAAAACCACGTTT 205811
|| ||||||||| | ||||| ||| |||| |||
Sbjct 144651 TAGATCACCTTCCTCCCTATCGGAAAACCCACATTT 144616
>seq2732
Length=47336
Score = 147 bits (162), Expect = 3e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 124537 CAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596
||||||||||||| |||| || || || || || || || ||| | ||| |||| |
Sbjct 1834 CAATGCAAATATTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTT 1775
Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
||||| ||| || | || |||||||||||||| ||||| || || |||||||
Sbjct 1774 CGGATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGATC 1715
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
|||| | || |||||||| ||||| ||||| || ||| |||| ||||| | || ||||
Sbjct 1714 AACAGCGTCTAATTTTTGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATA 1655
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765
||||||| ||||| || || |||||||| || | ||| | |||||||
Sbjct 1654 ATATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGG 1606
>seq749
Length=113903
Score = 136 bits (150), Expect = 6e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | || || | || || ||||| || ||| | ||| |||| |
Sbjct 938 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 879
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| ||| | ||| |||||||||||||| ||||| || || || ||||||
Sbjct 878 GATACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 819
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | ||||| || || ||||| || |||||| | || ||| | || ||||||
Sbjct 818 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 759
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||||| ||||| ||| | ||||| ||| |||| ||||| ||||||||
Sbjct 758 ATTCAAAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGGTAT 709
>seq609
Length=128410
Score = 102 bits (112), Expect = 1e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || || | || || |||| || || || || || ||||| | || |
Sbjct 92743 AATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTC 92802
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| || || ||| | ||| ||||| ||||| ||||| ||||| || || |||||
Sbjct 92803 TGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGATCA 92862
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| | | || || || ||||||||||| || ||| |||| || || || || ||
Sbjct 92863 ACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGTACCTTGTCCGACTACAA 92922
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| || ||||| | ||||||||| | ||| | || ||||||||
Sbjct 92923 CATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGGTAT 92973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755154195328000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |