Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq225 205 9e-48 >seq225 Length=233467 Score = 205 bits (226), Expect = 9e-48 Identities = 474/706 (67%), Gaps = 10/706 (1%) Strand=Plus/Minus Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128 ||| ||||||||||| ||||| | ||||| | || ||||| || ||||| || || Sbjct 26879 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 26820 Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188 || | || || ||||| || | | || || ||||| |||||| ||||| || Sbjct 26819 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 26760 Query 16189 TACTACACTATTTAACGGAGGGTT-TAATAAGTGTTTAAACATTATACAAGCAAAATCAC 16247 | | | || ||| | || || ||| |||| ||||| | ||| || || |||| Sbjct 26759 AATT-CGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCAC 26701 Query 16248 AATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTC 16307 |||| | ||| || || | |||| || || |||||||| | |||||||||| | Sbjct 26700 AATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAAC 26641 Query 16308 CTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTG 16367 | ||||| |||| ||| || || | ||||| ||| ||||| ||||||||||| | Sbjct 26640 CACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTCAACGG 26581 Query 16368 CGGCAAATGCAACCAATCGCTCACCGTACGTT---CTAtttttactttctatccattttt 16424 | |||||||||| | || ||||| | ||| | | || | ||||| Sbjct 26580 CAGCAAATGCAATTACACGTTCACCAAA-GTTGGCCGACTTCGAGGAA--ATCCAAGCAA 26524 Query 16425 tagcccaatttgctttttgtttAACA-CAGTTCATGTTCTCTATTGCATTAAATAAATAA 16483 ||||||| ||| || | || || ||| ||| ||||||| ||||| ||||| ||| Sbjct 26523 GCGCCCAATCTGCCTTACGCTTTACGGCAGG-CATTGTCTCTATAGCATTGAATAAGTAA 26465 Query 16484 tttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGA 16543 || ||| ||| || |||||| ||||| |||| || ||||||||||| ||||| Sbjct 26464 TTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGC 26405 Query 16544 ATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA 16603 | ||||||||| || || ||||| ||||| ||||| | || || | | ||| ||||| Sbjct 26404 ACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCC 26345 Query 16604 GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCA 16663 | | || | ||| ||| ||||| || || || ||||| || || ||||| || Sbjct 26344 TGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCT 26285 Query 16664 AGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCT 16723 | | |||| |||||||| | ||| ||||| | || | ||| ||| | |||| Sbjct 26284 AACACGTGTGAAATAAAATGTCGTTCATTATCAGTTAGACGTGCCCAATCATCCATATCT 26225 Query 16724 TTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 || || | ||| || || |||| ||||| || || || | |||| Sbjct 26224 TTAGAAAGATCTACTTCCCCTACTGTCCAGAACGATGCTTCTGCCT 26179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462327226456000