Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq225 219 4e-52 >seq225 Length=233467 Score = 219 bits (242), Expect = 4e-52 Identities = 481/713 (67%), Gaps = 12/713 (2%) Strand=Plus/Minus Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 ||||| || | || || | ||| || | || || ||||| | ||||||| | ||| Sbjct 26899 CCTAGCTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAA 26840 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 |||||||| |||| || || || | | ||||| ||||| | || || ||| Sbjct 26839 TTCATACCGATTAAATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACA 26780 Query 14138 GCCTCGTTTATAATAATCGTAATAATT---TCATTAGAAGGAGGATATTTTAGATGTTTA 14194 || || || || || || |||| |||||| || | | ||| ||||| Sbjct 26779 GCTTCAGAAATTATT-TC--AACAATTCGCTCATTACTTGGTTTTTGTATTAAATGTTGG 26723 Query 14195 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 14254 || || ||||| || || ||||||||||| |||||||||| ||| ||||| || ||| Sbjct 26722 AACATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAA 26663 Query 14255 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 14314 ||||| || |||||||| || || ||||| || | ||| || || | ||| || || Sbjct 26662 AATGTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCA 26603 Query 14315 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14374 ||||| || || ||||| |||||||| || |||| ||||| ||||| || Sbjct 26602 CTGAAGAAAATACCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGAC 26543 Query 14375 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14434 || || ||||| ||||| || | || || | | |||||| || Sbjct 26542 TTCGAGGAAATCCAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCT 26483 Query 14435 ATAGCATTAAATAAATG-TTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGT 14491 |||||||| ||||| | |||||| | ||| ||| ||| ||| ||||||||||| | | Sbjct 26482 ATAGCATTGAATAAGTAATTCCTT-TGTTTCGAGTCCTT--AATATATGTATCAATTAAT 26426 Query 14492 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTA 14551 | ||||||||||||||| || | || ||||| || || ||||| ||||| || || | Sbjct 26425 ATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGT 26366 Query 14552 GCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14611 || |||| | ||| || || | | || | ||| | | ||||||||| || |||||| Sbjct 26365 GCCTCTGTCACTTGGACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCA 26306 Query 14612 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGT 14671 ||| || || ||||| || || | || | |||||| | | | || | || | || Sbjct 26305 TCAGATGCGGCGAAAAAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTTAGA 26246 Query 14672 TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 | |||||| | | ||| ||||||||||||||||| | |||||||| || Sbjct 26245 CGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCCCTACTGTCCAGAA 26193 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 || |||||| ||||||||| |||||||| ||| ||| | | ||||| | ||| Sbjct 27123 TAGAAATCAGCATCTAACGTAAAAACATGATCCATACGACTAGCAGTTACGCCAAATTTC 27064 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 || ||||||| ||| | |||||||||||||| ||||| || || | ||| ||| |||| Sbjct 27063 TGGTATTCACCCACTTTCTTTTCAAAGAAGTTCGTTTTTCCGTCTAATGAAATAAGTTCC 27004 Query 13976 ATAAAA 13981 || ||| Sbjct 27003 ATGAAA 26998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482152902932800