Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21]
31,960 sequences; 519,005,690 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq2732 105 5e-18
seq609 98.7 8e-16
seq749 91.5 1e-13
>seq2732
Length=47336
Score = 105 bits (116), Expect = 5e-18
Identities = 163/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
|||||| | || | ||| || ||||| ||||| || ||||| |||| ||| || |||
Sbjct 1620 AAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATC 1679
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||||||||| || || ||| | || || | |||||||| || | |||||||||||
Sbjct 1680 TTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGCGGAATTCCTTCCTTATC 1739
Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
||||| ||| || ||| ||| ||| || ||||| |||| |||||| |
Sbjct 1740 TTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGT 1799
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC--TCTTATAAA 18342
|| || || | |||||||| || ||||||||| | ||| ||||| |||
Sbjct 1800 CTTACCCGTAAGGGTTTTTACGAATATTTGCATTGCTGAACAATCTTACAAA 1851
>seq609
Length=128410
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| || || ||||| || ||||| ||||||||||||| || || || ||||
Sbjct 92955 AGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGACCATCT 92896
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
||||||||||| || || |||| | | |||||||| ||| | || || || ||
Sbjct 92895 TCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACCCTCTTTGTCT 92836
Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
|||| | || ||||| | | | | |||||| |||||| || | ||||||| |
Sbjct 92835 TGGATTT-TAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGT 92777
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|| || || || ||||| || ||||| ||||||||
Sbjct 92776 CTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 92741
>seq749
Length=113903
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || ||||| |||||||| || ||||||| || ||| | ||| ||||| |||
Sbjct 736 TGTAGAGTGGATTCCTTTTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGT 795
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| || | || | | ||||||||| ||| | ||||||||||| ||||| |
Sbjct 796 TTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTT-T 854
Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301
|| ||||| | ||| || || ||||| || | |||||| |||| || ||
Sbjct 855 AGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGT 914
Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325
||| ||||| || ||||| |||||
Sbjct 915 CAAAGTTTTGACGAAAATCTGCAT 938
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || ||||| | ||| |||| |||||||| || || || || |||||||| |||| |
Sbjct 940 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 999
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | ||||||| |||||| || ||| |||| | | ||||||||| |||
Sbjct 1000 AGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGG 1059
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACC-TGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||| || || ||| | | |||| | | | | ||| ||| || || ||
Sbjct 1060 ATTCCTTCTTTGTCTTGAATCT-TAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 1118
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|| | |||||| | ||||| ||||| || || || || |||||||||||
Sbjct 1119 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 1169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379196240770200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |