Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq291 495 5e-135 seq225 253 3e-62 >seq291 Length=196152 Score = 495 bits (548), Expect = 5e-135 Identities = 1242/1851 (67%), Gaps = 49/1851 (3%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||||||||| | ||| ||||| || || || ||||| |||| ||||| ||| Sbjct 78018 GCTGGTTTCGTACGCAAATAATACATGCCAGTCTTGAGACCTGCCTTCCAGCCGTAGAAA 77959 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || ||| || || || ||| | || || || | || || || | || ||||| Sbjct 77958 TGTATAGAAGTGAGCTTACCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTC 77899 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGCAATTTC 62245 ||||||||||| || || | |||||||||||||| || ||| || || | ||| || Sbjct 77898 TGATCGATGAATGCACCACGATCTGCAGCCATTTTGATCGAT-GTTTTCACGGAAATCTC 77840 Query 62246 CCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATGG 62301 ||||| |||||| || | |||| || | | | ||| | || || |||| || |||| Sbjct 77839 CCAAACAGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATTTTGTATGG 77781 Query 62302 ATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT-CTCGGTT 62360 |||| | | ||||| ||||||| || ||||||| ||| | | ||||||| Sbjct 77780 ATCCGCGACTGGTTATAATATTATTCTTCATATCATCATCCCACAGNACCCAACTCGGTT 77721 Query 62361 AAAACTC-TAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGT 62419 | | | | ||| || || | || || ||||| ||||| || || | || | || || Sbjct 77720 AGATCGCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGT 77662 Query 62420 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62479 |||||||| || |||||||| | |||||||| || |||| |||||| || ||||| Sbjct 77661 ATAAATATTGGAAGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGA 77602 Query 62480 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTC--TGATTTTA 62537 ||||| ||||| || || | || ||| || | | ||| ||||| | ||||| Sbjct 77601 AGCAGTTGGCATGGGCGCAAGCAGCAAAGAGTTGCGGACACC--ATGTTGCTTTATTTTC 77544 Query 62538 TCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGT 62597 || || | | ||||||||||||||| | ||| | ||| ||| Sbjct 77543 TCCTTCAATTCGGTCCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGT 77484 Query 62598 AGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCT 62657 |||||||| ||||| || || ||| ||| || ||||| | || | || |||||| Sbjct 77483 AGAATACCCTTACTAACGGGTGAACCTTTATACGTTTCATAGGTGCCATAGTTTTCAGCT 77424 Query 62658 AGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGA 62717 | || ||||| || || || || || || ||||| ||||| || || | || ||| | | Sbjct 77423 AATTCGCAACTGGCTTCCAAGGCGCCATAGTAAATAGTTTCGAATATTTGCTGATTCAAA 77364 Query 62718 TCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCT 62777 |||||| || || |||| ||| | ||||| || ||||| || || ||| Sbjct 77363 CGGAATGCTTCTTCACTTTCGTATGGGTAACGCATTAGAATTAAAGCGTCGGCAAAACCT 77304 Query 62778 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA--GCTTCTGGAATAG 62835 || | |||||||| || || | |||||| ||| || |||| || || || | | Sbjct 77303 TGTATGCCAATACCAATGGGACGATGTCTGAAATTCGA--TTTCCTTGCCTCCGGCAAGG 77246 Query 62836 GATAATAATTAATATCTATAATTTTATTGAGATTTC-TGACAATTACTTTGACCACATCC 62894 |||||| |||||| ||||| |||||||| ||||| | || | ||||| || || Sbjct 77245 GATAATGATTAATGTCTATGATTTTATTCAGATTACGTGTAACGGTCTTTGTG-ACTTCT 77187 Query 62895 TTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACATGTTCAATGCAACAGAT 62951 || || ||| ||| | | | | | | |||||||| ||||| || | || Sbjct 77186 TTGAGGCGCTTAAAGTCATACGTTTTCTCGGGTGTGACAAACATATTCAAGGCGATCGAA 77127 Query 62952 GCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 63011 |||| || ||||| |||||||||| | || ||||| | || || || || | | Sbjct 77126 GCCAAGTTGCACACAGCTACCTCATCGGGTGACGAATATTCCACAATTTCGGTACATAAA 77067 Query 63012 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63071 ||||||||||| || || || | ||| ||||||||||||||| ||||| ||||| ||| Sbjct 77066 TTACTACACTTAATTGTGCCAACATTCTGTTGATTACTCTTTCGATTACAAGCATCTTTA 77007 Query 63072 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63131 || | ||| |||| || || || || | || ||||| ||||| ||| | | |||| Sbjct 77006 TACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAAT-GCTAAACCAAAGACT 76948 Query 63132 C-GAGCCTTTATTATAG-ATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTT 63189 | || |||||| | ||| | | ||||| || || | ||| ||| || || Sbjct 76947 TTGTGCTTTTATTTTCTTATTGGCACGTCCTTCCTGTT-CATATTTCAGATATAACTTTT 76889 Query 63190 CGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACC 63249 ||||||| || ||||| || | | || | ||||| | | |||||||| | ||||| Sbjct 76888 CGAACTCTTCACCCCATACTTCATGTAAACCGGGACACTTGTGTGGACACATTAGCGACC 76829 Query 63250 ACTCTCCGTCATC--CTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA- 63305 | ||| ||||| |||| || ||||||||||| |||||||| ||||| | || ||| Sbjct 76828 AGTCT---TCATCGGCTTCTACACGTTTCATAAATAGATCAGGTATCCATA-AGGCATAG 76773 Query 63306 AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63365 || | |||||| | | ||| || || || || || || ||||| | || | || | Sbjct 76772 AACAAATCTCTGGCGCGATGCTCTTCTTTGCCAGTGTTTTTTTTCAATTCCAAAAATTCG 76713 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | |||||||| |||||| ||||||| ||| ||||| | | || || ||||| || Sbjct 76712 AAAATATCAGCATGCCATGGTTCCAGGTAGATGGCAAAGGCGCCTGGTCGTTTACCGCCA 76653 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 || ||||| | || | || | ||||| | |||| |||||| || | | ||| ||| Sbjct 76652 CCTTGATCCACATAGCGTGCTATATTATTGAACACTCGCAACATAGGCACCAAACCATTT 76593 Query 63486 GATATACCATTGGTACCGGAGATATAGC--CTCCACTGGCACGAAT---AT-TACTAATT 63539 ||| | | ||| ||||| | | || || || | ||||| || || ||| || Sbjct 76592 GATGTGCTATTTGTACC-CACA-ATTGCAGTGCCTTTTGCACGTATGCAATGTAC--GTT 76537 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG-TTTTAACGTGTCATA 63598 ||||| || || || || ||| || || ||||| ||| | | | | ||| | | Sbjct 76536 --CAGACCAATACCGCCAGCAGATTTGGAAATCAATGCACATTGATGTGCAGATGTGA-A 76480 Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658 || || || ||| ||| || | |||| | |||||||| || |||| ||| | | Sbjct 76479 AATACCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAATTGCGGCTG 76420 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 |||| | ||| || | || |||||||| || ||||| | ||| ||||| | Sbjct 76419 CTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGTGTAAAATAACGTTCGGAAAGCAA 76360 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63778 ||||| || || || |||| || || || ||| || || | || |||||||| Sbjct 76359 GTTGTAAGTTTCGATTGCTGCATCGATGTCTTCGCCATGTATACCGATGGCAACACGCAT 76300 Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 |||||| ||||| |||| |||||||||||| ||| | ||| | ||| ||||| ||| Sbjct 76299 TAACATATGCTGTGGTCGCTCAACAATTTTGCCGTTCAATTTTAGCAAATAGGAACGTTC 76240 Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | ||||||||||||||||| || || ||| || || | |||||||| Sbjct 76239 AAGCGTTTTAAAACCAAAATAATTATAACCAAAATCGCGGGCATAAATAAT 76189 Score = 95.1 bits (104), Expect = 2e-14 Identities = 196/286 (69%), Gaps = 7/286 (2%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||||||||| | ||| ||||| || || || ||||| |||| ||||| ||| Sbjct 85094 GCTGGTTTCGTACGCAAATAATACATGCCAGTCTTGAGACCTGCCTTCCAGCCGTAGAAA 85035 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || ||| || || || ||| | || || || | || || || | || ||||| Sbjct 85034 TGTATAGAAGTGAGCTTACCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTC 84975 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGCAATTTC 62245 ||||||||||| || || | |||||||||||||| || ||| || || | ||| || Sbjct 84974 TGATCGATGAATGCACCACGATCTGCAGCCATTTTGATCGAT-GTTTTCACGGAAATCTC 84916 Query 62246 CCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATGG 62301 ||||| ||||| || | |||| | || | | ||| | | | |||| || |||| Sbjct 84915 CCAAACTGTTTTGTATAGATCGCGT-ATGTGCTGTGGTATGCATTCAATATTTTGTATGG 84857 Query 62302 ATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAA 62347 |||| | | ||||| ||||||| || ||||||| ||| || Sbjct 84856 ATCCGCGACTGGTTATAATATTATTCTTCATATCATCATCCCACAA 84811 >seq225 Length=233467 Score = 253 bits (280), Expect = 3e-62 Identities = 487/713 (68%), Gaps = 9/713 (1%) Strand=Plus/Minus Query 33407 AATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 33466 || ||| | ||| || || ||||| ||||| ||| | || |||||||| || || Sbjct 26888 AAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGAT 26829 Query 33467 GAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTAT 33526 | || || || | ||| |||| | ||||| || ||||| || || | | || Sbjct 26828 TAAATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAAT 26769 Query 33527 AATAAATCTAACGGTT---TCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACA 33583 || || ||| || || | ||| ||| |||| |||||||| ||||||||||| Sbjct 26768 TATT--TC-AACAATTCGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACA 26712 Query 33584 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCC 33643 |||||| || || || || ||||| |||| ||||| ||| || ||||| || | || Sbjct 26711 TGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCC 26652 Query 33644 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGAT 33703 ||||||| ||||| || |||||||| || || ||||| || || ||||| || Sbjct 26651 TGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAAT 26592 Query 33704 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGTA-T 33760 ||||| || |||||||| ||||| | | || ||| | ||| || | | | | Sbjct 26591 ACCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAGGAAAT 26532 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||| | |||||||| ||||| ||||| |||||| || ||||| ||||| || Sbjct 26531 CCAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAA 26472 Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880 | || || ||| || || |||| ||| ||||| || || | ||||||||||| Sbjct 26471 TAAGTAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTC 26412 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33940 ||||| | || || || || || |||||||| ||||| || | ||||| || | || Sbjct 26411 AGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTG 26352 Query 33941 CACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAA 34000 ||||| || || ||||| ||| |||||||||||| || |||||| || || || Sbjct 26351 GACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAA 26292 Query 34001 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 34060 ||| || || || ||| ||||||| | ||| | ||||| |||||||| Sbjct 26291 AAAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTTAGACGTGCCCAATCATC 26232 Query 34061 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 ||||||||||| | ||| ||||| | |||||||| || ||||| ||||||| Sbjct 26231 CATATCTTTAGAAAGATCTACTTCCCCTACTGTCCAGAACGATGCTTCTGCCT 26179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629565987868800