Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq291 412 3e-110 seq225 262 4e-65 >seq291 Length=196152 Score = 412 bits (456), Expect = 3e-110 Identities = 1212/1850 (66%), Gaps = 41/1850 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || |||| ||||| ||||| || | ||| || | || ||||||||| ||||| Sbjct 78045 TCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCAGTC 77986 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || || |||| ||||| ||||| ||| || || || | || | || | | Sbjct 77985 TTGAGACCTGCCTTCCAGCCGTAGAAATGTATAGAAGTGAGCTTACCATAGTTGGGCTCA 77926 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | | ||| | | || ||||| ||||| || || ||||| | || || |||||| Sbjct 77925 GCCACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCACGATCTGCAGCCATT 77866 Query 36970 TCTAAAATACAT-TTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTA 37026 | | | || |||| | || ||||||||||| ||||| |||| | ||| | Sbjct 77865 TTGA---TCGATGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTATGTGC 77809 Query 37027 TCTGGTA---AATCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083 | ||||| | || | || ||| || || || | | ||| ||||||| || Sbjct 77808 TGTGGTATGGATTCAATATTTTGTATGGATCCGCGACTGGTTATAATATTATTCTTCATA 77749 Query 37084 TCATTATTCCACATATTTCTACTTA-TTAGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 |||| || ||||| | ||| |||| || | || | ||| |||||||||| || Sbjct 77748 TCATCATCCCACAGNACCCAACTCGGTTAGATCGCGTAACAAGTGATGATTTACAACTTG 77689 Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 ||| || || || | || | | |||||| |||||| ||| || ||||||| ||||| Sbjct 77688 AAATTCACCCGAAAGCACACGACGTGTATAAATATTGGAAGTGTACGGTTCAAATGACTC 77629 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 ||| || | | ||||| | ||| || ||||| ||||| || || | || | || Sbjct 77628 ATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAGTT 77569 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 | | |||||| || ||| ||| || | ||| |||||| ||| | ||| ||||| Sbjct 77568 GCGGACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAGTTGG 77509 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 | || |||||| ||||| ||||||||||| ||||| | || ||| | ||||| || Sbjct 77508 TGTTTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTTTATACGT 77449 Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442 ||||| | || || ||| ||||| ||||||||| | ||| | ||| |||| || || Sbjct 77448 TTCATAGGTGCCATAGTTTTCAGCTAATTCGCAACTGGCTTCCAAGGCGCCATAGTAAAT 77389 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAA 37502 |||||||| ||||| ||| || ||||||||| || ||| ||| || | || Sbjct 77388 AGTTTCGAATATTTGCTGATTCAAACGGAATGCTTCTTCACTTTCGTATGGGTAACGCAT 77329 Query 37503 TAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562 || || || | || || ||||| || | || ||||| ||||| | |||| | ||| Sbjct 77328 TAGAATTAAAGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGATGTCTGAAATT 77269 Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT--- 37619 ||| | | || || ||||||| ||| || ||||| |||||||| ||||| Sbjct 77268 CGATTTCCTTGCCTCCGGCAAGGGATAATGATTAATGTCTATGATTTTATTCAGATTACG 77209 Query 37620 TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAA----ATACGTTATTAT 37675 | |||| || ||| || | |||| ||| | | ||| ||||||| || | Sbjct 77208 TGTAAC-GGTCTTT--GTGA--CTTCT----TTGAGGCGCTTAAAGTCATACGTT-TTCT 77159 Query 37676 ------TAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTT 37729 | ||||| || |||| | || || | | || || ||||| || ||||| Sbjct 77158 CGGGTGTGACAAACATATTCAAGGCGATCGAAGCCAAGTTGCACACAGCTACCTCATC-G 77100 Query 37730 CGTTACTAA-ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTG 37788 || || || ||| | ||| || ||||| | |||||| | ||||||| || | ||| Sbjct 77099 GGTGACGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTC 77040 Query 37789 CTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCT 37848 |||||| ||| |||||||| ||||||||| | || || || || || || Sbjct 77039 TGTTGATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCC 76980 Query 37849 ATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTT--AAttt 37906 | ||| | || ||||| ||| | |||| |||||| | || || | | Sbjct 76979 ACTTGCGATTCAATAATGCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGT 76920 Query 37907 ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATA 37966 ||| | ||| |||| | |||||| || | || || | |||||||| || || Sbjct 76919 CCTTCCT--GTTCATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTA 76862 Query 37967 ATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCA 38026 | || ||||| | | |||||||||||| ||||| |||||||| |||||| |||| || Sbjct 76861 AACCGGGACACTTGTGTGGACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCA 76802 Query 38027 TAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCC 38086 |||||| |||||||| |||||| ||| || |||||| ||| | || ||||| || | Sbjct 76801 TAAATAGATCAGGTATCCATAAGGCATAGAACAAATCTCTGGCGCGATGCTCTTCTTTGC 76742 Query 38087 CTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAA 38146 | || ||| | || | ||| ||||| |||||||| ||||||||||| | || | Sbjct 76741 CAGTGTTTTTTTTCAATTCCAAAAATTCGAAAATATCAGCATGCCATGGTTCCAGGTAGA 76682 Query 38147 TCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTAT 38206 | | | || ||||||| |||| | || || |||| | ||| | || | ||||| Sbjct 76681 TGGCAAAGGCGCCTGGTCGTTTACCGCCACCTTGATCCACATAGCGTGCTATATTATTGA 76622 Query 38207 ATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTAC 38266 | | || |||||||| || | |||||| ||| ||| ||| |||| || ||| | Sbjct 76621 ACACTCGCAACATAGGCACCAAACCATTTGATGTGCTATTTGTACCCACAATTGCAGTGC 76562 Query 38267 CCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAG 38326 | || || ||||| | || || || || || || ||| ||| || || || | Sbjct 76561 CTTTTGCACGTATGCAATGTACGTTCAGACCAATACCGCCAGCAGATTTGGAAATCAATG 76502 Query 38327 CGCATTG-TTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATA 38385 | ||||| | | | | | ||| ||||| || || || ||| || | |||| | Sbjct 76501 CACATTGATGTGCAGATGTGAAA-ATACCATCAATGGAATCGTCCACCATGGTCAGTAGA 76443 Query 38386 AAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGT 38445 || || |||| ||| ||| ||| | || || | || ||||| |||||| Sbjct 76442 AAGCATGATGACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGT 76383 Query 38446 ATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCG 38505 | || | ||| || | | || || ||||| ||| | |||| || || |||| Sbjct 76382 GTAAAATAACGTTCGGAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTTCGCCA 76323 Query 38506 TGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTC 38565 || ||||| | | || | ||||| |||||| ||||||| || | ||||| ||| Sbjct 76322 TGTATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCGTTC 76263 Query 38566 TGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615 ||| || | ||| || ||| | ||||| | ||||||||| |||| Sbjct 76262 AATTTTAGCAAATAGGAACGTTCAAGCGTTTTAAAACCAAAATAATTATA 76213 >seq225 Length=233467 Score = 262 bits (290), Expect = 4e-65 Identities = 480/694 (69%), Gaps = 17/694 (2%) Strand=Plus/Minus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || || ||||| ||||| | ||||||| ||||||||||| || | || ||| Sbjct 26879 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 26820 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT--CGAC 11581 ||| | ||| | || || || |||| || || ||||| || ||| ||||| | || Sbjct 26819 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 26760 Query 11582 GTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCA 11641 | | || | ||| |||| |||| |||||||| ||||| ||||| || || ||| Sbjct 26759 AAT-TCGCT-CATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCA 26702 Query 11642 CAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAAT 11701 ||||| | || || |||| ||||||||||| |||||||| || || ||||| || Sbjct 26701 CAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAA 26642 Query 11702 CCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACA 11761 || ||||| || | ||| || || | |||||| ||| ||||| || || || || Sbjct 26641 CCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTCAACG 26582 Query 11762 GCTGCAAATGCTACTACTCTTTCTCCATATA---CCTTGTTGCTAGATATCCATTTTCTG 11818 || |||||||| | ||| | ||| ||| | || || || ||||| Sbjct 26581 GCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAGGAAATCCAAGCAAGC 26522 Query 11819 GCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA---ATGC 11875 |||||||| || || |||||| |||||| |||||||| || ||||| || | Sbjct 26521 GCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGTAATTC 26462 Query 11876 ATTT-TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATG 11934 ||| |||| | || | | ||||||||| ||||||| ||||||||||| ||||| Sbjct 26461 CTTTGTTTCGAG----TCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATG 26406 Query 11935 AATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACT-GTACAT 11993 | ||| ||||| || ||||||||||||||||| || |||||||||| |||| | || | Sbjct 26405 CACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGT-CACTTGGACTT 26347 Query 11994 CCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATG 12053 || | || | ||| ||| ||| ||||| |||||||||||| | || ||||| | Sbjct 26346 CCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGG 26287 Query 12054 CTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAAT 12113 ||| | ||| ||||| | | ||| | | ||||| |||||||||| | || Sbjct 26286 CTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTTAGACGTGCCCAATCATCCATAT 26227 Query 12114 CTTTTGATAAATCTACTTCTTCAACGGTCCAAAA 12147 |||| || | ||||||||| | || ||||| || Sbjct 26226 CTTTAGAAAGATCTACTTCCCCTACTGTCCAGAA 26193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468337624342400