Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq291 149 6e-31 seq749 136 4e-27 seq2732 111 2e-19 >seq291 Length=196152 Score = 149 bits (164), Expect = 6e-31 Identities = 713/1110 (64%), Gaps = 55/1110 (5%) Strand=Plus/Minus Query 152721 ACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTG 152780 || |||||||| | ||| || || || |||||| ||||| |||||||| |||||| Sbjct 78042 ACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCAGTCTTG 77983 Query 152781 AGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGG-TCGGC 152839 || || | ||||||||| | || | || | | |||| ||| ||| ||| || || Sbjct 77982 AGACCTGCCTTCCAGCCGTAGAAATGTATAGAAGTGAGCTTA-CCATAGTTGGGCTCAGC 77924 Query 152840 CATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGTC 152899 || || | ||| ||||| ||||| ||||| || ||||| || | |||||| ||||| | Sbjct 77923 CACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCACGATCTGCAGCCATTTT 77864 Query 152900 GATC-ATGAATTTTC-CGTTGTTGTGCCAGCATTCCCAGATTGTCATGTACAGCTTTTTA 152957 |||| ||| ||||| || | | | ||||| | || |||| || | Sbjct 77863 GATCGATG--TTTTCACG-------GAAATC--TCCCAAACAGTTTTGTATAGATCGCGT 77815 Query 152958 ATGTTGTCGGGAAT---TTCA-TCTATGGAAGCTATCGATCCTCGGTTTGCCATGATCCT 153013 |||| | || || |||| | | | | ||| ||||| || | | || || | Sbjct 77814 ATGTGCTGTGGTATGGATTCAATATTTTG----TATGGATCCGCGACTGGTTATAATATT 77759 Query 153014 TTTCCGCATACTACTTGTGTACAG-ATTCAATGCGATTAGATCATCGACCAAGTAGCGGT 153072 ||| |||| | |||| | ||| || ||||||| | ||||| | | Sbjct 77758 ATTCTTCATATCATCATCCCACAGNACCCAACTCGGTTAGATCGCGTAACAAGTGATGAT 77699 Query 153073 TGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATT---ACTGTGAAACG 153129 | |||||||||||||| ||||| | ||||| | | | | ||| | ||| ||| Sbjct 77698 TTACAACTTGAAATTCACCCGAAAGCACACGACGTGTATAAATATTGGAAGTGT---ACG 77642 Query 153130 GTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCA 153189 ||||||| ||||| ||||| | |||||||| || | || || |||||| ||| | Sbjct 77641 GTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAA 77582 Query 153190 CAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCC 153249 ||||| || || || | || |||| | ||| ||| |||||||| | ||| | || Sbjct 77581 GCAGCAAAGAGTTGCGGACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCC 77522 Query 153250 ATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGC 153309 | | ||| ||| | || ||||| || || || | || || | ||| | Sbjct 77521 AAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTG 77462 Query 153310 TACCGGCAAACGTGCTATACGGCTCACTGTCAGACGCCAGTTTCAAACTGGCATCGAGCG 153369 ||| | |||| ||| | || || || | || ||||||| || | | Sbjct 77461 AACCTTTATACGTTTCATAGGTGCCATAGTTTTCAGCTAATTCGCAACTGGCTTCCAAGG 77402 Query 153370 CGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCA-GCATCGCTCACG 153428 || ||| || | ||||||| | || || | |||| ||||| | || || |||| Sbjct 77401 CGCCATAGTAAATAGTTTCGAATATTTGCTGATTCA----AACGGAATGCTTCT-TCACT 77347 Query 153429 TACGGTATGCGCAAC--ATGACAAAT---GCATCGGCCAAACCTTGAATGCCAATGCCTA 153483 | || |||| | ||| || | || | || ||||| |||||||| |||||||| || | Sbjct 77346 TTCG-TATGGGTAACGCATTAGAATTAAAGCGTCGGCAAAACCTTGTATGCCAATACCAA 77288 Query 153484 TGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACA--GGATAGAAATTGCGGTC 153541 |||||||||| | | ||| ||||| |||| || | || ||||| ||| ||| Sbjct 77287 TGGGACGATGTCTGAAATTCGATTTCCTTGC--CTCCGGCAAGGGATAATGATTAATGTC 77230 Query 153542 GATAATTTTATTTAAACTAA---TCACGACATGTTTCACCACAGAATGCAACAGTTGAAA 153598 || |||||||| | | || | ||| | | | || | || | || ||| Sbjct 77229 TATGATTTTATTCAGATTACGTGTAACGGTCTTTGTGACTTCTT--TGAGGCGCTT-AAA 77173 Query 153599 ATCAAACGTTCCATTAA---TGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAAC 153655 ||| ||||| | ||| | | | || | ||| ||||| ||||||||||| || Sbjct 77172 GTCATACGTTTTCTCGGGTGTGACAAACATATTCAAGGCGATCGAAGCCAAGTTGCACAC 77113 Query 153656 GGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTAT 153715 || || ||||| | |||||| || ||||| | ||| ||||| || || || || Sbjct 77112 AGCTACCTCATCGGGTGACGAATATTCCACAATTTCGGTACATAAATTACTACACTTAAT 77053 Query 153716 CAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGG 153775 ||| ||| |||||| || || || |||||||| || || || | ||||||||| Sbjct 77052 TGTGCCAACATTCTGTTGATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGG 76993 Query 153776 TGTGCCGGTTTCGGCTTGAATTTCTATAAT 153805 ||||||||| || |||| ||| ||||| Sbjct 76992 TGTGCCGGTCTCCACTTGCGATTCAATAAT 76963 >seq749 Length=113903 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||| ||| | ||| || |||| |||||||| || || ||||| |||||| Sbjct 939 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 998 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| || |||||||| ||| |||| | |||||| ||||| || || Sbjct 999 CAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 1058 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| | || | |||| | | ||| | || |||| || || | Sbjct 1059 GATTCCTTCTTTGTC-TTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAA 1117 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | |||||||| ||||| || || ||||| |||||||| Sbjct 1118 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 1166 Score = 102 bits (112), Expect = 8e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||||| |||||||||||||| ||||| |||||| | Sbjct 28 CCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGAC 87 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || | ||||| || || |||||| |||||||||||| || || Sbjct 88 AAGGTACGTCCGTCCTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGA 147 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCA 139715 |||||||| || || || | || | ||| | |||| || | || || | || || | Sbjct 148 ATGCCTTCCTTATC-TTGGATCTTAGCCTTAAC-GTTCTCAATGGTATCTGAAGGTTCAA 205 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | ||| | || ||||| || | || || ||||| |||||||| Sbjct 206 CNTCCAAGGTAATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 254 >seq2732 Length=47336 Score = 111 bits (122), Expect = 2e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | ||||| || | ||||||||||| ||||| ||||| || Sbjct 1605 GCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGC 1664 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| ||||| | || || || ||| | || ||||| || ||||| || || Sbjct 1665 CAATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGCGG 1724 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| |||| | ||| | ||||| | || || | ||||| | Sbjct 1725 AATTCCTTCCTTATC-TTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAA 1783 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||| || | ||||| || || | |||||||||||||||||||| ||| Sbjct 1784 CCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAATATTTGCATTGCT 1836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495865822432000