Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq225 250 2e-61 >seq225 Length=233467 Score = 250 bits (276), Expect = 2e-61 Identities = 489/715 (68%), Gaps = 16/715 (2%) Strand=Plus/Minus Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 ||||| || | || || | |||||| | ||| || ||||| | ||||||| | ||| Sbjct 26899 CCTAGCTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAA 26840 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 |||||||| |||| || || || | | ||||| ||||| | || || ||| Sbjct 26839 TTCATACCGATTAAATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACA 26780 Query 13806 GCCTCTTTTATAATAATTGTAATAAT---CTCATTAGAAGGAGGATATTTTAGATGTTTA 13862 || || ||| ||| || ||| ||||||| || | | ||| ||||| Sbjct 26779 GCTTCAGA---AATTATTTCAACAATTCGCTCATTACTTGGTTTTTGTATTAAATGTTGG 26723 Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 || || ||||| || || ||||||||||| |||||||||| ||| ||||| || ||| Sbjct 26722 AACATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAA 26663 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA--TGACC 13980 ||||| || |||||||| || || ||||| || | ||| || || | |||||| || | Sbjct 26662 AATGTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCA 26603 Query 13981 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT 14040 | ||| | |||| || ||||| |||||||| || |||| ||||| ||||| || Sbjct 26602 CTGAAGAAAATA--CCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCG 26545 Query 14041 TTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14100 || || ||||| ||||| || | || || | | |||||| | Sbjct 26544 ACTTCGAGGAAATCCAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCT 26485 Query 14101 CAATAGCATTAAATAAATA-TTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAA 14157 | |||||||| ||||| || |||||| | ||| ||| ||| ||| ||||||||||| | Sbjct 26484 CTATAGCATTGAATAAGTAATTCCTT-TGTTTCGAGTCCTT--AATATATGTATCAATTA 26428 Query 14158 GTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATC 14217 || ||||||||||||||| || | || ||||| || || ||||| ||||| ||||| | Sbjct 26427 ATATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAAC 26368 Query 14218 TAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATAC 14277 || || | | ||| |||||| | | || | ||| | | ||||||||| || |||| Sbjct 26367 GTGCCTCTGTCACTTGGACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATAC 26308 Query 14278 CATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA 14337 ||||| || || ||||| || || | || | |||||| | | | || | || | | Sbjct 26307 CATCAGATGCGGCGAAAAAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTTA 26248 Query 14338 GTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 | | |||||| | ||| ||||||||||||||||| | |||||||| || Sbjct 26247 GACGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCCCTACTGTCCAGAA 26193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479536348664000