Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq225 228 8e-55 >seq225 Length=233467 Score = 228 bits (252), Expect = 8e-55 Identities = 470/693 (68%), Gaps = 12/693 (2%) Strand=Plus/Minus Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 |||||| | ||| || ||||| | ||||||| | ||||||||||| |||| || || Sbjct 26879 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 26820 Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT 13613 || | | |||||| ||||| | || || ||||| || ||| || | Sbjct 26819 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGA---AATTATTTC 26763 Query 13614 AATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 || ||| |||||| || | | ||| ||||| || || ||||| || || || Sbjct 26762 AACAATTCGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTC 26703 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 ||||||||| |||||||||| ||| ||||| || |||||||| || |||||||| || Sbjct 26702 ACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAA 26643 Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790 || ||||| || | ||| || || | ||| || || ||||| || || ||||| Sbjct 26642 ACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTCAAC 26583 Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850 |||||||| || |||| ||||| ||||| || || || ||||| Sbjct 26582 GGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAGGAAATCCAAGCAAG 26523 Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG-TT 13909 ||||| || | || || | | |||||| || || ||||||||||| | || Sbjct 26522 CGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGTAATT 26463 Query 13910 CCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 |||| | ||| ||| ||| ||| ||||||||||| | || ||||||||||||||| || Sbjct 26462 CCTT-TGTTTCGAGTCCTT--AATATATGTATCAATTAATATGCTATACATTTCAGAATG 26406 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 | || || || || || ||||| ||||| || || | || |||| | ||| || || Sbjct 26405 CACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTC 26346 Query 14028 CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC 14087 | | | || | ||| | | |||||||| |||||||||||| || || ||||| || Sbjct 26345 CTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGC 26286 Query 14088 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATC 14147 || | || | |||||| | | | || | || | || | |||||| | | ||| Sbjct 26285 TAACACGTGTGAAATAAAATGTCGTTCATTATCAGTTAGACGTGCCCAATCATCCATATC 26226 Query 14148 CTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 ||||||||||||||||| | |||||||| || Sbjct 26225 TTTAGAAAGATCTACTTCCCCTACTGTCCAGAA 26193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478397603774400