Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq609 127 2e-24 seq1128 116 3e-21 seq749 111 1e-19 >seq609 Length=128410 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||||| || ||||||||| | ||||| |||||| Sbjct 92970 CCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAC 92911 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||||||||| ||||| || ||||| ||||||||||| | || Sbjct 92910 AAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGG 92851 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| ||||| || ||| ||||||| | | | ||||| || |||||| Sbjct 92850 ATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACC 92791 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| || || || || || |||| ||||| || ||||| |||||||| Sbjct 92790 TCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 92741 >seq1128 Length=88325 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 ||||||| || || | || ||||||||||| || ||||| || | |||||| |||| Sbjct 339 CGCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGG 280 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 |||| |||||| | || || | ||| |||||||| || ||||| || |||||||| | | Sbjct 279 ACAAAGTACGTCCATCCTCAAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTG 220 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | || || || || ||| ||||||| | ||| || || || ||| | Sbjct 219 GGATTCCCTCCTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCCGAAGGCTCAA 160 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| ||||| ||||| ||||| || |||||||| Sbjct 159 CTTCCAAGGTGATTGTTTTGCCGGTGAGAGTCTTCACGAAGATTTGCAT 111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| || ||||| |||| || |||||||| | ||| ||||||||| Sbjct 109 CCACCACGGAGTCGCAATACCAAGTGGAGGGTTGATTCCTTTTGGATATTATAATCGGAC 50 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTT 42991 || || ||| |||| |||||||| || ||||| || ||||| || |||| Sbjct 49 AAGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTT 1 >seq749 Length=113903 Score = 111 bits (122), Expect = 1e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| || | ||| ||| ||||| | |||||||||||| Sbjct 28 CCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGAC 87 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| |||| ||||||||||||||||| || ||||| || || ||||| | || Sbjct 88 AAGGTACGTCCGTCCTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGA 147 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || | ||| || || || || || Sbjct 148 ATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGTTCAACN 207 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || || || ||||| || ||||||||| Sbjct 208 TCCAAGGTAATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCATT 255 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| || | ||| |||||| || | ||||| |||||| Sbjct 256 CCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 315 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| ||| |||| |||||||| || ||||| || ||||| || |||||||| | || Sbjct 316 AATGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGAGGA 375 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| | || || | ||| || || || ||| || Sbjct 376 ATACCCTCCTTATCTTGGATCTTGGCCTTTACGTTCTCAATGGTATCTGAAGGCTCAACT 435 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||| || || || || || |||||||| Sbjct 436 TCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTTACGAAGATTTGCAT 482 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || ||||| || | ||| |||||||| | |||||||||||||| |||||| |||| Sbjct 499 AATACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCGGACAAGGTACGTCCGTCT 558 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||||||| || ||||| || || || || |||||||| | || | ||| || || || Sbjct 559 TCCAATTGCTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCCTCCTTGTC- 617 Query 43018 CTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 ||| || |||| || | ||| ||| ||| || || || || | || || || Sbjct 618 CTGAATTTTTGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGT 677 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| || || | |||||| || || |||||||| Sbjct 678 TTTACCCGTCAAAGTTTTAACGAAGATTTGCAT 710 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | |||||||| | || |||||| || | ||||||||||| Sbjct 939 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 998 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || ||| |||| |||| |||||| |||||||| || || || |||||||| | || Sbjct 999 CAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 1058 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| |||| || | ||| || ||| | || || Sbjct 1059 GATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 1118 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || | || ||||| || ||||||||||| Sbjct 1119 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 1169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381221051773680