Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq291 520 1e-142 seq225 268 1e-66 >seq291 Length=196152 Score = 520 bits (576), Expect = 1e-142 Identities = 1238/1843 (67%), Gaps = 43/1843 (2%) Strand=Plus/Minus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 ||||||||| | ||| |||||||| || || ||||| |||| ||||| ||||| || Sbjct 78013 TTTCGTACGCAAATAATACATGCCAGTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTAT 77954 Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946 | || || || |||| | || || || | ||| || || | ||||||||| ||||| Sbjct 77953 AGAAGTGAGCTTACCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTCTGATC 77894 Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGGAATTTCCCAAA 71005 |||||| || || | |||||||||||||| || ||| || || | ||| ||||||| Sbjct 77893 GATGAATGCACCACGATCTGCAGCCATTTTGATCGAT-GTTTTCACGGAAATCTCCCAAA 77835 Query 71006 TAGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATGGATCCA 71061 |||||| || | |||| || | | | ||| | || || |||| || |||||||| Sbjct 77834 CAGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATTTTGTATGGATCCG 77776 Query 71062 CCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT-CTCGGTTAAAAC 71120 | | | ||||| |||| || || || |||| ||| | | |||||||| | | Sbjct 77775 CGACTGGTTATAATATTATTCTTCATATCATCATCCCACAGNACCCAACTCGGTTAGATC 77716 Query 71121 TC-TAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAA 71179 | ||| || ||| |||| || ||||||||||| || || | || | ||| || |||| Sbjct 77715 GCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGTATAAA 77657 Query 71180 TATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 71239 |||| || |||||||| | ||||||||| || |||| |||||| || ||||| |||| Sbjct 77656 TATTGGAAGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAG 77597 Query 71240 TCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTA 71299 | ||||| || || | || | | || | | ||||||| ||||| || || | Sbjct 77596 TTGGCATGGGCGCAAGCAGCAAAGAGTTGCGGACACCATGTTGCTTTATTTTCTCCTTCA 77537 Query 71300 GAGATTC---CCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNA 71356 |||| ||||||||||||||| | |||| | Sbjct 77536 ---ATTCGGTCCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTAGAA 77480 Query 71357 TGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTT 71416 | || |||||| || ||| ||| ||| || || || | || | ||||| |||| || Sbjct 77479 TACCCTTACTAACGGGTGAACCTTTATACGTTTCATAGGTGCCATAGTTTTCAGCTAATT 77420 Query 71417 CACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTT 71476 | ||||| || || || || ||||| ||||| |||||||| || | || ||| | | Sbjct 77419 CGCAACTGGCTTCCAAGGCGCCATAGTAAATAGTTTCGAATATTTGCTGATTCAAACGGA 77360 Query 71477 GTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 71536 |||||| || || |||| ||| | ||||| || ||||| || || ||||| | Sbjct 77359 ATGCTTCTTCACTTTCGTATGGGTAACGCATTAGAATTAAAGCGTCGGCAAAACCTTGTA 77300 Query 71537 CGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCA--GCTTCTGGAATAGGATA 71594 ||||||||| || || | ||||| ||| || |||| || || || | ||||| Sbjct 77299 TGCCAATACCAATGGGACGATGTCTGAAATTCGA--TTTCCTTGCCTCCGGCAAGGGATA 77242 Query 71595 ATAATTAATATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTT 71651 || |||||| ||||| |||||||| ||||| | | || | ||||| || || || Sbjct 77241 ATGATTAATGTCTATGATTTTATTCAGATTACGTGTAACGGT--CTTTGTG-ACTTCTTT 77185 Query 71652 TAGTTTGAGAAAATCAAA---TCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGC 71708 || ||| ||| | | || | | | ||||||| |||||||| | || || Sbjct 77184 GAGGCGCTTAAAGTCATACGTTTTCTCGGGTGTGACAAACATATTCAAGGCGATCGAAGC 77125 Query 71709 CAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATT 71768 || || || || |||||||||| | | ||||| | |||||| || || | ||| Sbjct 77124 CAAGTTGCACACAGCTACCTCATCGGGTGACGAATATTCCACAATTTCGGTACATAAATT 77065 Query 71769 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 71828 ||||||||| || || || | ||| ||||||||||||||| ||||| ||||| ||||| Sbjct 77064 ACTACACTTAATTGTGCCAACATTCTGTTGATTACTCTTTCGATTACAAGCATCTTTATA 77005 Query 71829 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC- 71887 | || | || || || || || | || ||||| ||||| ||| | | |||| Sbjct 77004 CAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAAT-GCTAAACCAAAGACTTT 76946 Query 71888 GAGCCTTTATTATATTCTTGTATC-TCTTTTCTCTTTCGTATTGTGTATATAATCGTTCG 71946 | || |||||| | || ||| | || || || || | |||| |||||| |||| Sbjct 76945 GTGCTTTTATTTTCTTATTGGCACGTCCTTCCTGTT-CATATTTCAGATATAACTTTTCG 76887 Query 71947 AACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCAC 72006 ||||| || ||||| | | | ||| || ||||| | | |||||||| | ||||| Sbjct 76886 AACTCTTCACCCCATACTTCATGTAAACCGGGACACTTGTGTGGACACATTAGCGACCAG 76827 Query 72007 TCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAG 72065 ||| |||| | | ||| ||||||||||| |||||||| ||||| | || ||| || | Sbjct 76826 TCTTCATCGGCTTCTACACGTTTCATAAATAGATCAGGTATCCATA-AGGCATAGAACAA 76768 Query 72066 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 72125 |||||||| | |||||| || || || || || ||||| | || | || | | ||| Sbjct 76767 ATCTCTGGCGCGATGCTCTTCTTTGCCAGTGTTTTTTTTCAATTCCAAAAATTCGAAAAT 76708 Query 72126 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTG 72185 ||||| |||||| ||||||| ||| ||||| | | || || ||||| || || || Sbjct 76707 ATCAGCATGCCATGGTTCCAGGTAGATGGCAAAGGCGCCTGGTCGTTTACCGCCACCTTG 76648 Query 72186 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGC 72245 ||| | || | || | ||||| | |||| |||||| || | | |||||| |||| Sbjct 76647 ATCCACATAGCGTGCTATATTATTGAACACTCGCAACATAGGCACCAAACCATTTGATGT 76588 Query 72246 ACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACC 72302 | ||| || ||| | | || | || | ||||| || | || || | ||||| Sbjct 76587 GCTATTTGTACCCACAATTGCAG-TGCCTTTTGCACGTATGCAATG-TACGT-TCAGACC 76531 Query 72303 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG-TTTTAACGTATCATAGATGCCCT 72361 || || || || ||| || || ||||| ||| | | | | | | | | || || | Sbjct 76530 AATACCGCCAGCAGATTTGGAAATCAATGCACATTGATGTGCAGATGTGA-AAATACCAT 76472 Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 72421 | || ||| |||| |||| | |||||||| || |||| ||| | | |||| Sbjct 76471 CAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAATTGCGGCTGCTTAGTGG 76412 Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 72481 | ||| || | || |||||||| || ||||| | ||| || || | ||||| | Sbjct 76411 CAGCAGCGAAAAGCGTTGGAGAAGCATGTGTAAAATAACGTTCGGAAAGCAAGTTGTAAG 76352 Query 72482 TCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATAT 72541 | || || |||| || || || |||||| || | || |||||||||||||||| Sbjct 76351 TTTCGATTGCTGCATCGATGTCTTCGCCATGTATACCGATGGCAACACGCATTAACATAT 76292 Query 72542 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 72601 |||| |||| ||||| || ||| || | ||| | ||| ||||| ||| | |||| Sbjct 76291 GCTGTGGTCGCTCAACAATTTTGCCGTTCAATTTTAGCAAATAGGAACGTTCAAGCGTTT 76232 Query 72602 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||||||||||| || || ||| || || | |||||||| Sbjct 76231 TAAAACCAAAATAATTATAACCAAAATCGCGGGCATAAATAAT 76189 Score = 107 bits (118), Expect = 3e-18 Identities = 196/281 (70%), Gaps = 7/281 (2%) Strand=Plus/Minus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 ||||||||| | ||| |||||||| || || ||||| |||| ||||| ||||| || Sbjct 85089 TTTCGTACGCAAATAATACATGCCAGTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTAT 85030 Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946 | || || || |||| | || || || | ||| || || | ||||||||| ||||| Sbjct 85029 AGAAGTGAGCTTACCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTCTGATC 84970 Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGGAATTTCCCAAA 71005 |||||| || || | |||||||||||||| || ||| || || | ||| ||||||| Sbjct 84969 GATGAATGCACCACGATCTGCAGCCATTTTGATCGAT-GTTTTCACGGAAATCTCCCAAA 84911 Query 71006 TAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCA 71061 ||||| || | |||| | || | | ||| | | | |||| || |||||||| Sbjct 84910 CTGTTTTGTATAGATCGCGT-ATGTGCTGTGGTATGCATTCAATATTTTGTATGGATCCG 84852 Query 71062 CCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAA 71102 | | | ||||| |||| || || || |||| ||| || Sbjct 84851 CGACTGGTTATAATATTATTCTTCATATCATCATCCCACAA 84811 >seq225 Length=233467 Score = 268 bits (296), Expect = 1e-66 Identities = 393/554 (71%), Gaps = 3/554 (1%) Strand=Plus/Minus Query 42046 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAA 42105 |||||||| ||||||||||||||||| || || || || |||||||||| ||||| Sbjct 26732 TAAATGTTGGAACATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAG 26673 Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165 ||| |||||||| || | || ||||||| ||||| || |||||||| || || || || Sbjct 26672 TTCATTGGAAAATGTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGC 26613 Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225 ||| ||| ||||| || ||||| || || ||||| ||||| | | || ||| | Sbjct 26612 AAAACTGCCACTGAAGAAAATACCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAA 26553 Query 42226 ACCGGC--ACTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 ||| ||| | | | |||| | |||||||| ||||| ||||| ||| Sbjct 26552 GTTGGCCGACTTCGAGGAAATCCAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGG 26493 Query 42283 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 42342 ||| || ||||| ||||| || | || || ||| || || |||| ||||||||| Sbjct 26492 CATTGTCTCTATAGCATTGAATAAGTAATTCCTTTGTTTCGAGTCCTTAATATATGTATC 26433 Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 || || | ||||||||||| ||||| | || || || || || |||||||| ||||| Sbjct 26432 AATTAATATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAA 26373 Query 42403 ACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCAC 42462 || | ||||| || || || ||||| || || |||||| ||| |||||| ||||| Sbjct 26372 GCAACGTGCCTCTGTCACTTGGACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCAC 26313 Query 42463 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGG 42522 || || ||| || || ||||| || || || ||| ||||||| | ||| | Sbjct 26312 AATACCATCAGATGCGGCGAAAAAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATC 26253 Query 42523 TGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582 |||| |||||||| ||||||||||| | ||||||||| |||| ||||| || Sbjct 26252 AGTTAGACGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCCCTACTGTCCAGAA 26193 Query 42583 TGATGCTTCTGCCT 42596 ||||||||||||| Sbjct 26192 CGATGCTTCTGCCT 26179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670871079889600