Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq749 145 8e-30 seq2732 107 2e-18 seq291 100 3e-16 >seq749 Length=113903 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || |||| ||| | ||| ||||||| |||||| || || || |||||||||||| Sbjct 939 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 998 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| |||||| ||||||||||| ||| |||| | |||||| ||||| || || Sbjct 999 CAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 1058 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||| || ||| | | ||| | || || | ||||| || Sbjct 1059 GATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 1118 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| ||||| || || ||||| |||||||| Sbjct 1119 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 1166 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| |||||||| ||||| |||||||||||| | Sbjct 484 CCACCGCGGAGACGCAATACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCGGAC 543 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| | ||| ||||| || |||| | |||||| ||||| ||||| Sbjct 544 AAGGTACGTCCGTCTTCCAATTGCTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGGA 603 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| ||||||| ||| | | ||| | || || | ||||| || Sbjct 604 ATACCCTCCTTGTCCTGAATTTTTGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACC 663 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || ||||| ||||| ||||| ||||||||| Sbjct 664 TCCAGAGTAATTGTTTTACCCGTCAAAGTTTTAACGAAGATTTGCATA 711 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| ||||| |||||||| |||||||||||| | Sbjct 28 CCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGAC 87 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| || | |||||| || || |||||| |||||||||||| || || Sbjct 88 AAGGTACGTCCGTCCTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGA 147 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| || || || || || | | || | || || | ||||| || Sbjct 148 ATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGTTCAACN 207 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| || | || || ||||| |||||||| Sbjct 208 TCCAAGGTAATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 254 >seq2732 Length=47336 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | ||| | |||||||| | |||||| ||||| || || || || || Sbjct 1605 GCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGC 1664 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||||| ||||| | ||| || || ||| | || ||||| || ||||| || || Sbjct 1665 CAATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGCGG 1724 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || |||||| || | ||||| | || |||| || || || Sbjct 1725 AATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAAC 1784 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | ||||| || || | |||||||||||||||||||| ||| Sbjct 1785 CTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAATATTTGCATTGCT 1836 >seq291 Length=196152 Score = 100 bits (110), Expect = 3e-16 Identities = 917/1469 (62%), Gaps = 62/1469 (4%) Strand=Plus/Minus Query 156143 ACGGTAAATTGCTGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTTTTG 156202 || |||||||| | ||| || || || || || ||||| |||||||| || ||| Sbjct 78042 ACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCAGTCTTG 77983 Query 156203 AGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTTT-GC 156261 || || |||||| ||||| | || | || | | ||| || ||| ||| | || Sbjct 77982 AGACCTGCCTTCCAGCCGTAGAAATGTATAGAAGTGAGCTTAC-CATAGTTGGGCTCAGC 77924 Query 156262 CATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCATTTC 156321 || || | ||||||||| ||||| |||||||| ||||| || | ||||| ||||||| Sbjct 77923 CACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCACGATCTGCAGCCATTTT 77864 Query 156322 AATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGATTGTCATGTACAGCTTTTTTAG 156381 ||| || || ||| | |||| ||||| | || |||| || | || Sbjct 77863 GATCG---ATGTT------TTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTAT 77813 Query 156382 ATTGTCGGGAATTTTGGCGATAGAAGCTATCGATCCTC---TGTTTGCCATGATTGTTTT 156438 | | || || | ||| ||| ||||| | || || || ||| || | Sbjct 77812 GTGCTGTGGTATGGATTCAATATTTTGTATGGATCCGCGACTGGTTATAAT-ATTATTCT 77754 Query 156439 TCGCATACTATTTGTATAGAGATTTAATTTGATTAGATCATCGACCAAGTAGCGGTTGAC 156498 || || | | | || | || | | ||||||| | ||||| | || || Sbjct 77753 TCATATCATCATCCCACAGN-ACCCAACTCGGTTAGATCGCGTAACAAGTGATGATTTAC 77695 Query 156499 AACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATT---ACTGTGAAACGGTTC 156555 |||||||||||| ||||| | ||||| | | | | ||| | ||| ||||||| Sbjct 77694 AACTTGAAATTCACCCGAAAGCACACGACGTGTATAAATATTGGAAGTGT---ACGGTTC 77638 Query 156556 AAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAG 156615 ||||||||| |||||| | |||||||| || | || || |||||| ||| | || Sbjct 77637 AAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAG 77578 Query 156616 CAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCCCATAA 156675 ||| || || || | || | || | ||| || ||||| | | ||| | ||| | Sbjct 77577 CAAAGAGTTGCGGACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAG 77518 Query 156676 CGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTACC 156735 ||| ||| ||| ||||| || || || | || || | || | ||| Sbjct 77517 ATCAGTTGGTGTTTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACC 77458 Query 156736 GGCAAACGTGCTATAAGGCTCAC---TAACAGATGCCAGTTCGTAACTGGCCTCGAGCGC 156792 | |||| ||| | || | ||| | | |||| ||||||| || | || Sbjct 77457 TTTATACGTTTCATAGGTGCCATAGTTTTCAGCT---AATTCGCAACTGGCTTCCAAGGC 77401 Query 156793 AGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGTA 156852 ||| || | |||||| ||||| | |||||| | | || | || || |||| Sbjct 77400 GCCATAGTAAATAGTTTCGAATATTTGCTGATTCAAACGGAATGCTTCTTCACTTTCGTA 77341 Query 156853 CGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACG 156912 || |||| | || || || ||||| |||||||| |||||||| || |||||||| Sbjct 77340 TGGGTAACGCATTAGAATTAAAGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACG 77281 Query 156913 ATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAA--ATTGCGATCAATAATT 156970 ||| | | ||| ||||| |||| | | | || | || ||| || || ||| Sbjct 77280 ATGTCTGAAATTCGATTTCCTTGCC--TCCGGCAAGGGATAATGATTAATGTCTATGATT 77223 Query 156971 TTATTCAAACTATCCACTACA---TGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAA 157027 ||||||| | || || | | |||| | || | | | ||| ||| | Sbjct 77222 TTATTCAGATTACGTGTAACGGTCTTTGTGACTTCTTTGAGGC---GCTTAAAGTCATAC 77166 Query 157028 GTATCATTAT---TGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTT 157084 || | | ||| | | |||| | ||| ||||| || | || || || || Sbjct 77165 GTTTTCTCGGGTGTGACAAACATATTCAAGGCGATCGAAGCCAAGTTGCACACAGCTACC 77106 Query 157085 TCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCG 157144 || ||||| | |||||| || ||||| | ||| ||||| || || || || || Sbjct 77105 TCATCGGGTGACGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCA 77046 Query 157145 CAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCG 157204 ||| |||||| || || || || ||||| || || || |||||||| ||||||||| Sbjct 77045 ACATTCTGTTGATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCG 76986 Query 157205 GTTTCGGCTTGAATTTCTATGATGTTGCGCATTAATGTAACCGCGGGCATTTGCTCGCGA 157264 || || |||| ||| || ||| | | || | || | || ||| | | Sbjct 76985 GTCTCCACTTGCGATTCAATAATGCTAAACC--AAAG--ACTTTGTGCTTTTATTTTCTT 76930 Query 157265 AACTGGCCTTTA--TCCTCGTAATGTTTG---TACCAGTATTCAAAGTCATCACC--ATA 157317 | |||| | |||| | || ||| || | | ||| || || ||||| ||| Sbjct 76929 AT-TGGCACGTCCTTCCTGTTCATATTTCAGATATAACTTTTCGAACTCTTCACCCCATA 76871 Query 157318 CGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTC 157377 | | || | | ||||||| || |||||||||| ||||| | | |||| Sbjct 76870 CTTCATGTAAACCG--GGACACTTGTGTGGACACATTAGCGACCAGTCTTCATCGGCTTC 76813 Query 157378 AACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCAC--GCGCTTTG 157435 || ||||||||||||| ||| || | |||||| || | | |||||| | |||| || Sbjct 76812 TACACGTTTCATAAATAGATCAGGTATCCATAAGGCATAGAACAAATCTCTGGCGCGATG 76753 Query 157436 GTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCAC 157495 | |||| ||||| ||||| || | |||| || | ||| || |||||| Sbjct 76752 CT--CTTCTTTGCCAGTGTTTTTTTTCAATTCCAAAAATTCGAAAATATCAGCATGCCAT 76695 Query 157496 GGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTT---GCCACCTTGATCCACGTGACGC 157552 ||||| | ||| | || ||| ||| ||| || ||||||||||||||| | || Sbjct 76694 GGTTCCAGGTAGATGGCAAAGGCGCCTGGTCGTTTACCGCCACCTTGATCCACATAGCGT 76635 Query 157553 ACCATATTATTAAAAACTCGCAGCATTGG 157581 | |||||||| || ||||||| ||| || Sbjct 76634 GCTATATTATTGAACACTCGCAACATAGG 76606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506811847747200