Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21]
31,960 sequences; 519,005,690 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq749 145 8e-30
seq2732 107 2e-18
seq291 100 3e-16
>seq749
Length=113903
Score = 145 bits (160), Expect = 8e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| || |||| ||| | ||| ||||||| |||||| || || || ||||||||||||
Sbjct 939 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 998
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| |||| |||||| ||||||||||| ||| |||| | |||||| ||||| || ||
Sbjct 999 CAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 1058
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||||||||| ||| || ||| | | ||| | || || | ||||| ||
Sbjct 1059 GATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 1118
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | ||| | |||||||| ||||| || || ||||| ||||||||
Sbjct 1119 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 1166
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | |||||| || || |||| |||||||| ||||| |||||||||||| |
Sbjct 484 CCACCGCGGAGACGCAATACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCGGAC 543
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | |||||| | ||| ||||| || |||| | |||||| ||||| |||||
Sbjct 544 AAGGTACGTCCGTCTTCCAATTGCTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGGA 603
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| || || ||||| ||||||| ||| | | ||| | || || | ||||| ||
Sbjct 604 ATACCCTCCTTGTCCTGAATTTTTGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACC 663
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | ||| | || || || ||||| ||||| ||||| |||||||||
Sbjct 664 TCCAGAGTAATTGTTTTACCCGTCAAAGTTTTAACGAAGATTTGCATA 711
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | |||||| || || |||| ||||| |||||||| |||||||||||| |
Sbjct 28 CCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGAC 87
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | ||| || | |||||| || || |||||| |||||||||||| || ||
Sbjct 88 AAGGTACGTCCGTCCTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGA 147
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||| || || || || || | | || | || || | ||||| ||
Sbjct 148 ATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGTTCAACN 207
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | || ||||| || | || || ||||| ||||||||
Sbjct 208 TCCAAGGTAATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 254
>seq2732
Length=47336
Score = 107 bits (118), Expect = 2e-18
Identities = 163/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| |||| | ||| | |||||||| | |||||| ||||| || || || || ||
Sbjct 1605 GCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGC 1664
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| ||||| ||||| | ||| || || ||| | || ||||| || ||||| || ||
Sbjct 1665 CAATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGCGG 1724
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||| || || |||||| || | ||||| | || |||| || || ||
Sbjct 1725 AATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAAC 1784
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188
|||| ||| | ||||| || || | |||||||||||||||||||| |||
Sbjct 1785 CTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAATATTTGCATTGCT 1836
>seq291
Length=196152
Score = 100 bits (110), Expect = 3e-16
Identities = 917/1469 (62%), Gaps = 62/1469 (4%)
Strand=Plus/Minus
Query 156143 ACGGTAAATTGCTGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTTTTG 156202
|| |||||||| | ||| || || || || || ||||| |||||||| || |||
Sbjct 78042 ACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCAGTCTTG 77983
Query 156203 AGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTTT-GC 156261
|| || |||||| ||||| | || | || | | ||| || ||| ||| | ||
Sbjct 77982 AGACCTGCCTTCCAGCCGTAGAAATGTATAGAAGTGAGCTTAC-CATAGTTGGGCTCAGC 77924
Query 156262 CATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCATTTC 156321
|| || | ||||||||| ||||| |||||||| ||||| || | ||||| |||||||
Sbjct 77923 CACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCACGATCTGCAGCCATTTT 77864
Query 156322 AATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGATTGTCATGTACAGCTTTTTTAG 156381
||| || || ||| | |||| ||||| | || |||| || | ||
Sbjct 77863 GATCG---ATGTT------TTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTAT 77813
Query 156382 ATTGTCGGGAATTTTGGCGATAGAAGCTATCGATCCTC---TGTTTGCCATGATTGTTTT 156438
| | || || | ||| ||| ||||| | || || || ||| || |
Sbjct 77812 GTGCTGTGGTATGGATTCAATATTTTGTATGGATCCGCGACTGGTTATAAT-ATTATTCT 77754
Query 156439 TCGCATACTATTTGTATAGAGATTTAATTTGATTAGATCATCGACCAAGTAGCGGTTGAC 156498
|| || | | | || | || | | ||||||| | ||||| | || ||
Sbjct 77753 TCATATCATCATCCCACAGN-ACCCAACTCGGTTAGATCGCGTAACAAGTGATGATTTAC 77695
Query 156499 AACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATT---ACTGTGAAACGGTTC 156555
|||||||||||| ||||| | ||||| | | | | ||| | ||| |||||||
Sbjct 77694 AACTTGAAATTCACCCGAAAGCACACGACGTGTATAAATATTGGAAGTGT---ACGGTTC 77638
Query 156556 AAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAG 156615
||||||||| |||||| | |||||||| || | || || |||||| ||| | ||
Sbjct 77637 AAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAG 77578
Query 156616 CAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCCCATAA 156675
||| || || || | || | || | ||| || ||||| | | ||| | ||| |
Sbjct 77577 CAAAGAGTTGCGGACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAG 77518
Query 156676 CGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTACC 156735
||| ||| ||| ||||| || || || | || || | || | |||
Sbjct 77517 ATCAGTTGGTGTTTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACC 77458
Query 156736 GGCAAACGTGCTATAAGGCTCAC---TAACAGATGCCAGTTCGTAACTGGCCTCGAGCGC 156792
| |||| ||| | || | ||| | | |||| ||||||| || | ||
Sbjct 77457 TTTATACGTTTCATAGGTGCCATAGTTTTCAGCT---AATTCGCAACTGGCTTCCAAGGC 77401
Query 156793 AGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGTA 156852
||| || | |||||| ||||| | |||||| | | || | || || ||||
Sbjct 77400 GCCATAGTAAATAGTTTCGAATATTTGCTGATTCAAACGGAATGCTTCTTCACTTTCGTA 77341
Query 156853 CGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACG 156912
|| |||| | || || || ||||| |||||||| |||||||| || ||||||||
Sbjct 77340 TGGGTAACGCATTAGAATTAAAGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACG 77281
Query 156913 ATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAA--ATTGCGATCAATAATT 156970
||| | | ||| ||||| |||| | | | || | || ||| || || |||
Sbjct 77280 ATGTCTGAAATTCGATTTCCTTGCC--TCCGGCAAGGGATAATGATTAATGTCTATGATT 77223
Query 156971 TTATTCAAACTATCCACTACA---TGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAA 157027
||||||| | || || | | |||| | || | | | ||| ||| |
Sbjct 77222 TTATTCAGATTACGTGTAACGGTCTTTGTGACTTCTTTGAGGC---GCTTAAAGTCATAC 77166
Query 157028 GTATCATTAT---TGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTT 157084
|| | | ||| | | |||| | ||| ||||| || | || || || ||
Sbjct 77165 GTTTTCTCGGGTGTGACAAACATATTCAAGGCGATCGAAGCCAAGTTGCACACAGCTACC 77106
Query 157085 TCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCG 157144
|| ||||| | |||||| || ||||| | ||| ||||| || || || || ||
Sbjct 77105 TCATCGGGTGACGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCA 77046
Query 157145 CAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCG 157204
||| |||||| || || || || ||||| || || || |||||||| |||||||||
Sbjct 77045 ACATTCTGTTGATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCG 76986
Query 157205 GTTTCGGCTTGAATTTCTATGATGTTGCGCATTAATGTAACCGCGGGCATTTGCTCGCGA 157264
|| || |||| ||| || ||| | | || | || | || ||| | |
Sbjct 76985 GTCTCCACTTGCGATTCAATAATGCTAAACC--AAAG--ACTTTGTGCTTTTATTTTCTT 76930
Query 157265 AACTGGCCTTTA--TCCTCGTAATGTTTG---TACCAGTATTCAAAGTCATCACC--ATA 157317
| |||| | |||| | || ||| || | | ||| || || ||||| |||
Sbjct 76929 AT-TGGCACGTCCTTCCTGTTCATATTTCAGATATAACTTTTCGAACTCTTCACCCCATA 76871
Query 157318 CGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTC 157377
| | || | | ||||||| || |||||||||| ||||| | | ||||
Sbjct 76870 CTTCATGTAAACCG--GGACACTTGTGTGGACACATTAGCGACCAGTCTTCATCGGCTTC 76813
Query 157378 AACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCAC--GCGCTTTG 157435
|| ||||||||||||| ||| || | |||||| || | | |||||| | |||| ||
Sbjct 76812 TACACGTTTCATAAATAGATCAGGTATCCATAAGGCATAGAACAAATCTCTGGCGCGATG 76753
Query 157436 GTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCAC 157495
| |||| ||||| ||||| || | |||| || | ||| || ||||||
Sbjct 76752 CT--CTTCTTTGCCAGTGTTTTTTTTCAATTCCAAAAATTCGAAAATATCAGCATGCCAT 76695
Query 157496 GGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTT---GCCACCTTGATCCACGTGACGC 157552
||||| | ||| | || ||| ||| ||| || ||||||||||||||| | ||
Sbjct 76694 GGTTCCAGGTAGATGGCAAAGGCGCCTGGTCGTTTACCGCCACCTTGATCCACATAGCGT 76635
Query 157553 ACCATATTATTAAAAACTCGCAGCATTGG 157581
| |||||||| || ||||||| ||| ||
Sbjct 76634 GCTATATTATTGAACACTCGCAACATAGG 76606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506811847747200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |