Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq157 145 1e-29 seq398 131 2e-25 >seq157 Length=290505 Score = 145 bits (160), Expect = 1e-29 Identities = 293/430 (68%), Gaps = 6/430 (1%) Strand=Plus/Plus Query 70053 CCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCA 70112 |||| || | || || ||||| || ||||| || || || |||||| | || | || Sbjct 144629 CCGATAGGGAGGAAGGTGATCTAGGCCCAGTTTATGGTTTTCAGTGGCGTCATTTTGGGG 144688 Query 70113 CCAAGTATGTAGACTGCGAG-ACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACA 70171 ||||||| | ||||| || |||| || | | ||||| | |||||| | ||| | Sbjct 144689 CCAAGTACAGAAACTGCAAGGACAGT-TACAAAGATGAGGGTATAGATCAACTTCAGCAA 144747 Query 70172 ATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAAT 70231 | |||||||| ||| | |||||||| ||| || | || |||||| | |||||| Sbjct 144748 GTAATTGACACAATCAGAAACAATCCAAATGATCGGCGTATTATAATGTCTGCTTGGAAT 144807 Query 70232 CCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCG 70291 |||| ||| | | |||||||| |||||||| ||||| ||| | || || |||| | | Sbjct 144808 CCTGTCGATATCCCTCAAATGGCTCTACCACCTTGTCATTGTCTTGCACAATTTT--TTG 144865 Query 70292 TA--CGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTG 70349 | | |||| |||| || || | | || || | |||||||| ||||| | |||| Sbjct 144866 TTGCCAATGGAGAATTATCTTGTCAATTATACCAACGCAGTGCCGATATGGGATTGGGTG 144925 Query 70350 TACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCC 70409 |||| ||||| ||||| || || || | || | ||||||||||| ||||| | | Sbjct 144926 TACCATTTAATATTGCCTCGTACGCTTTGCTTACCTATATGATTGCTCATATTACTGATC 144985 Query 70410 TGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCG 70469 | | | || || || ||||| | ||||| || || || ||| ||||| || | Sbjct 144986 TCCGACCAGGGGATTTTGTCCACACTTTGGGCGATGCACATGTCTATAATAATCATATTG 145045 Query 70470 AGCCATTAAA 70479 | ||||||| Sbjct 145046 AAGCATTAAA 145055 >seq398 Length=160339 Score = 131 bits (144), Expect = 2e-25 Identities = 310/465 (67%), Gaps = 14/465 (3%) Strand=Plus/Minus Query 127312 CCGGCTATGATTAGCCTAGGTTTGAATAGATTGGCACTCTCGGCAAGTTTGGCATAGTCG 127371 |||||||| || | | |||| |||| || || ||| || | | | || | || ||| Sbjct 111923 CCGGCTATAATAACGCGAGGTCTGAAGAGTTTAGCATTCGCTTCCAATTGATCGTAATCG 111864 Query 127372 ACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCG 127431 | || || || | ||||| || || ||||| || |||||| | | || || || Sbjct 111863 ATAAGACCCGTACTTGCGTCCACTTTATATGGCATACTCTCGAAATATATCGACGTTGCT 111804 Query 127432 GACA--CGTT-----GCGG-----AATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCG 127479 || | |||| || | || ||||| || || || || || || || | ||| Sbjct 111803 GAAATACGTTTATTAGCAGTCATGAAACCGTGTGTTAGATGACCGCCATCCGGTAAATCA 111744 Query 127480 AGTCCCATGATTCTACCGTGCGGTTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATC 127539 || ||||| || | | |||| |||| | || ||||||||||||||||||| || | Sbjct 111743 AGACCCATTATACGATCGTGGGGTTGACAGAGCGCAGTGTACACGGCAAAGTTAGCTGGC 111684 Query 127540 GAGCCCGAGTACGGTTGTACACACACTCCCCATTCGGACTCG-TTCAAATTGAACGCTCT 127598 || ||||| || || |||||| ||| |||||||| || | || | | ||| || Sbjct 111683 GAACCCGAATAAGGCTGTACATTCACGCCCCATTC-CTCTGGATTGAGACGGAATGCCTC 111625 Query 127599 GAGACATCGCTGCTGTGCTAGCAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTA 127658 ||| || | ||||| || |||| || ||| ||||| || || ||||||||||| Sbjct 111624 GAGTGCACGTTTTTGTGCAAGTCGTTCTATTTCATCAATAAATTCATTTCCACCATAGTA 111565 Query 127659 TCGCTTTCCGGGCCTACCCTCCGAGTACTTGTTGATGAGACACGAACTCATGCATTCTCG 127718 |||||||| ||| | || || |||||||| ||| | || ||||| | |||||| Sbjct 111564 CCGCTTTCCAGGCATGCCTTCGGAGTACTTATTGTGCAAGCAAGAACTTAAGCATTCCAA 111505 Query 127719 CACCGGTAGAGTGGTAAAGTTTTCCGATGCGATCAACTCTAAGCC 127763 || | || | ||||| || || || |||| |||||||| Sbjct 111504 AACAGATACGGATGTAAAATTCTCACTGGCAATCATTTCTAAGCC 111460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740763146849600