Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21]
31,960 sequences; 519,005,690 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq749 125 5e-24
seq1128 95.1 9e-15
>seq749
Length=113903
Score = 125 bits (138), Expect = 5e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | || | || ||||||||| || ||||| || ||||| || || || |||
Sbjct 712 CCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTTTGAATATTATAGTCGGAC 771
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | || || || |||||||||||| | |||||||||||||| || ||
Sbjct 772 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 831
Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|||||||| || || |||||| ||| || ||| | || ||||||||| | || ||
Sbjct 832 ATTCCTTCCTTATCTTGAATTTTAGCT-TTGACATTCTCAATGGTATCGGAAGGCTCAAC 890
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || |||||||| || |||| |||||| || ||||| |||||
Sbjct 891 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 938
Score = 118 bits (130), Expect = 8e-22
Identities = 156/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || || ||||| || || || ||||| |||||||||||| | | | |||||
Sbjct 499 AATACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCGGACAAGGTACGTCCGTCT 558
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT-C 15270
|| ||||| || || ||| | || ||||||||||| || ||||| || || |||| |
Sbjct 559 TCCAATTGCTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCCTCCTTGTCC 618
Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330
|| ||||||| || || |||| || |||||| | ||| || || | ||||| ||
Sbjct 619 TGAATTTTTGCT-TTAACGTTTTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGT 677
Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|||||| |||| |||||| || || |||||||||
Sbjct 678 TTTACCCGTCAAAGTTTTAACGAAGATTTGCATA 711
Score = 113 bits (124), Expect = 3e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || || ||||| || || |||||||| |||||||||||| | | | ||||
Sbjct 43 AATACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGACAAGGTACGTCCGTCC 102
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| ||||||||||| ||| | ||||||||||| || || ||||| ||||| || ||
Sbjct 103 TCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCCTTATCT 162
Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331
|| || ||| || | || |||||||| | ||| || || ||||||||||||
Sbjct 163 TGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGTTCAACNTCCAAGGTAATGGTT 222
Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || || || || ||||||||
Sbjct 223 TTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 254
Score = 113 bits (124), Expect = 3e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| |||||||| || || || || || |||||||||||| ||| | | |||||||
Sbjct 957 AACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCTTC 1016
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| |||||| || || | || ||||||||||| || || ||||||||||||||
Sbjct 1017 CAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTG 1076
Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
||| || ||| || ||| |||| || |||||| ||| || || | || ||||| |
Sbjct 1077 AATCTTAGCT-TTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCT 1135
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371
| || |||| || || || || |||||||| || ||||
Sbjct 1136 TGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTGGAAA 1174
Score = 95.1 bits (104), Expect = 9e-15
Identities = 151/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209
|| || || ||||| || || || || || |||||||| ||| | ||| || |||
Sbjct 271 AATACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGG--ACAATGTGCGTCCGT 328
Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269
| || ||||| || || ||| | |||||||||||||| || ||||| || || || |
Sbjct 329 CCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGAGGAATACCCTCCTTAT 388
Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329
| || ||| |||||| | || |||||||| | || || || || || ||||
Sbjct 389 CTTGGATCTTGGCCTTTACGTTCTCAATGGTATCTGAAGGCTCAACTTCCAAAGTGATGG 448
Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|||| || || || || ||||| || |||||||||
Sbjct 449 TTTTGCCGGTGAGGGTCTTTACGAAGATTTGCATA 483
>seq1128
Length=88325
Score = 95.1 bits (104), Expect = 9e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| ||||| || || || || || ||||| ||||| ||| | | | | | || ||
Sbjct 319 ACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCCATCCTCA 260
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| ||| ||||| ||| | |||||||||||||| || ||| ||||| || || ||
Sbjct 259 AGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCTTGG 200
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|||||| || ||| | || |||||||| | || || || ||||| || |||||
Sbjct 199 ATTTTGGCTTTGACATTCTCAATGGTATCCGAAGGCTCAACTTCCAAGGTGATTGTTTTG 140
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || ||||| || || || |||||||||
Sbjct 139 CCGGTGAGAGTCTTCACGAAGATTTGCATA 110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362038126674360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |