Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21]
31,960 sequences; 519,005,690 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2732 208 2e-48
seq749 165 2e-35
seq609 129 1e-24
seq892 89.7 1e-12
>seq2732
Length=47336
Score = 208 bits (230), Expect = 2e-48
Identities = 183/228 (80%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||| || | |||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 1606 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 1665
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| || | ||| ||||| | ||| ||||| ||||||||||| | |||||||||||| ||
Sbjct 1666 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGCGGA 1725
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|||||||| ||||| ||||| || || || |||| ||| | ||||| ||| || |||
Sbjct 1726 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACC 1785
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| || || || |||||||| ||||| |||||||| ||||| ||||||
Sbjct 1786 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAATATTTGCATT 1833
>seq749
Length=113903
Score = 165 bits (182), Expect = 2e-35
Identities = 177/234 (76%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || | ||| | ||| || | ||| | |||||| || ||||| || || || ||
Sbjct 937 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 996
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | |||||||| |||||||| || ||||| |||| | |||||||| ||
Sbjct 997 GACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 1056
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| ||||||||||| || |||||||| ||||| |||||||| | |||||| |||||
Sbjct 1057 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 1116
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
||||| || || || ||||| ||||| | || || || || || |||||||||
Sbjct 1117 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 1170
Score = 140 bits (154), Expect = 7e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| |||| ||||| || ||||| || |||||||||||||| || || || | || ||
Sbjct 727 AGAACTAAATGTAGAGTGGATTCCTTTTGAATATTATAGTCGGACAGTGTGCGTCCATCC 786
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| | ||||| ||||| ||||| | | |||||||| || || |||||||| |||||
Sbjct 787 TCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 846
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||| || ||||| ||||| || | ||||||| ||| || ||||| | || || ||
Sbjct 847 TGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTT 906
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || | ||||| || || ||||||||
Sbjct 907 TTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 938
>seq609
Length=128410
Score = 129 bits (142), Expect = 1e-24
Identities = 149/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || || || || ||||| || | || | ||| ||||| | |||||||||
Sbjct 92940 GTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTACGACCATCTTCCAATTGTTTTCCG 92881
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | ||||||||| || || || || ||||| || || || || |||||
Sbjct 92880 GCGAAGATCAAACGCTGTTGATCTGGGGGGATACCCTCTTTGTCTTGGATTTTAGCTTTG 92821
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||| | ||| || ||| || ||||||| || || ||||||||||| | |||
Sbjct 92820 ACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTT 92761
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| || || ||||||||||||
Sbjct 92760 TTGACGAAAATCTGCATTTTG 92740
>seq892
Length=101496
Score = 89.7 bits (98), Expect = 1e-12
Identities = 117/157 (75%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 238578 ACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCAT 238637
|| || ||| ||| |||||| | || || |||||| |||| | ||||||||||||
Sbjct 69487 ACACATGATGACCTCTGGAATGCTGCTCAAATACAACTGGTTCGTGAAGGCAAAATGCAC 69546
Query 238638 AG-TTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGA 238696
| |||||| || | ||||||||| |||||||||||||||||| | | || ||| | ||
Sbjct 69547 GGATTTCTT-CGTAAGTATTGGGCCAAAAAGATACTTGAATGGTCCAACTCACCAGAAGA 69605
Query 238697 AGCTCTTAGATATAG-TATTTATCTGAACGATAAATA 238732
|| | | || || | |||||| | ||||| |||||
Sbjct 69606 GGCGC-TGGAAATTGCAATTTATTTAAACGACAAATA 69641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150926916747680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |