Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_005886.2 Length=47399 Score E Sequences producing significant alignments: (Bits) Value seq2983 219 1e-52 >seq2983 Length=44036 Score = 219 bits (242), Expect = 1e-52 Identities = 457/671 (68%), Gaps = 20/671 (3%) Strand=Plus/Minus Query 21244 CCTGCGCCGCGTCGACCTTAAGCACGGTCTGACGTTTGGTCATCGCGAGCATCGGACCTT 21303 ||| |||||||||| || || || || ||||||| || ||||| |||| |||| Sbjct 10039 CCTTCGCCGCGTCGGTTTTGAGTACCGTTGTGCGTTTGGACAGCGCGATATTCGGCCCTT 9980 Query 21304 CATTTGCGGTACGCTCGGCCGCGTAGACGCGTTCCATGATTTGCTGTGGTAGCGGTACGC 21363 | || ||||| ||||| || ||||||||||||||||| || ||| |||| ||||| || Sbjct 9979 CGTTGGCGGTGCGCTCCGCAGCGTAGACGCGTTCCATAATCGCCTGGGGTACCGGTATGC 9920 Query 21364 CGCCGTAGATGTACGACGGCTTCAGAAAGT-CGACAACTTCATCGTTGATGTAAATCGCA 21422 |||| ||| |||||||| ||||||| || || || | |||| || |||| Sbjct 9919 CGCCATAGTAATACGACGGTTTCAGAATGTCCGGCATTTCGCACGTT-TTGAAAATGATT 9861 Query 21423 AGATGCGAACGATGATATTTCTTGCCATTGATCAGCCAGTACGTAGGCTCATAGAAATGC 21482 || |||||||| || || ||||| || || |||||||||||||| ||||| ||||| || Sbjct 9860 AGGTGCGAACGGTGGTACTTCTTCCCGTTAATCAGCCAGTACGTCGGCTCGTAGAAGTGG 9801 Query 21483 ATCGATACCGGGTTCGACGATGCTTGTGCATCGAGCAACGGCGCGCACCAGTAGGGGTCA 21542 || | ||||| || | || | || || | ||| ||||||||||| ||||| Sbjct 9800 ATAGCGGACGGGTCGCCCGTATCGCGTTCGTCCAGAATCGGGGCGCACCAGTACGGGTCC 9741 Query 21543 ATCTGCACGATCCCCTTATACGCACCGGGCATCACCCCGTCGATATTAAACGGCTTTTCA 21602 | |||||| | ||| || |||| ||| | | ||||| ||||| ||||| ||| Sbjct 9740 ACCTGCACCAGCCCGCGGTAAGCACGCGGCTTAATTCCGTCCGGGTTAAATGGCTTCTCA 9681 Query 21603 TAGTAGTACGGGTCCGGGCTATCGACCTTGAACAACGCGATACGGATGCCGAAGATTCGA 21662 || | ||||||| ||| | || ||| || ||||| ||||| |||||||| || Sbjct 9680 TAAAATAACGGGTCGTCGCTTTTGATTTTGGCAAAGGCGATGCGGATCCCGAAGATGCGG 9621 Query 21663 CCCTTGCGAACAAACTGGATAGCGTGTTTCTTGATGTTAAACGCACGGTCATAGCGATCG 21722 ||| ||| | ||||| | || ||| || | | |||| || ||||| | | Sbjct 9620 CCCAGGCGGATAAACTCCACCATGTTTTTATTCAGGCCAAACCGTTTATCGTAGCGCTTG 9561 Query 21723 ATAA---ACTTGGCGTCTTTCGGG-TCA-AGT-TCGTTACCGTCGTCGCTGATGATCTTG 21776 | || | ||||| | |||| | | ||| ||| ||||| ||| | || | | Sbjct 9560 AAAATGCGCATGGCG---TGCGGGCTGATAGTCTCG---CCGTCTTCGGCCTTAATGTCG 9507 Query 21777 TAGCCCTTGCGCATCGCATCGCGC---GGCATCTGTGAACACGCTTTGTTGACGAGCCAA 21833 || |||| ||| | ||||||||| |||||| | ||| | ||||| | | ||| Sbjct 9506 TAACCCTGGCGGACAGCATCGCGCCCGGGCATCAG---ACAGACCTTGTTTATCATCCAG 9450 Query 21834 TGCGTAGCGATCAGGGCGCACATCTGATGCCCGATGAACGCTTGTTGCGCATACCAAAGA 21893 | | | | || |||||||||||| |||||||| || | || ||| ||||| ||| Sbjct 9449 TTCTGGGACAGCACGGCGCACATCTGGTGCCCGATAAAGCCCTGCGTCGCGTACCAGAGA 9390 Query 21894 ACGAGACCTTC 21904 ||| |||| Sbjct 9389 TAGAGCGCTTC 9379 Score = 120 bits (132), Expect = 9e-23 Identities = 179/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 19713 ACCGGACGCATCGTGCAACGACAAAACGGAAGTTGTCCCGGTTTGCCACGCTCACCCGTG 19772 ||||||||||| ||||| || || |||| || || || || ||| ||||| || || Sbjct 11576 ACCGGACGCATTGTGCAGCGGCAGTACGGCAGCTGACCTGGGAAGCCCCGCTCCCCTGTT 11517 Query 19773 CGTTTGTCGATGATCGGCGGTTCGCTCAGTTTGTATATATTACCGTTCAACTCGTCGCGA 19832 || | |||||| |||||||| ||| | | ||||| || ||||| | || Sbjct 11516 CGCTGGTCGATAATCGGCGGGTCGTCGATATCGTATACGTTCCCGTTGAGAGTGTACTTG 11457 Query 19833 TGATATTCGCGAGGGTGGTTCGAACCACCACCGTGAATCCATTCGTATTCATCCATGCCG 19892 ||||| ||||| || ||||| || || ||| ||| | ||||||| ||| | ||||| Sbjct 11456 TGATACTCGCGCGGTTGGTTGGACCCGCCAGAGTGTACCCATTCGAATTTAGTAATGCCA 11397 Query 19893 AGCGCCTGCATGCGCCCTGCGTTGATGCCGTTGAACGCCTTGCGTGTCTGATCGAGCGCA 19952 | | |||| ||| || |||||| |||| || ||||||| ||||| || | |||| Sbjct 11396 ACGGAGCGCATACGCTCTTTGTTGATCGTGTTGTACACCTTGCGGGTCTGGTCCATCGCA 11337 Query 19953 ACGTTTTGTGCCCA 19966 ||||||| ||||| Sbjct 11336 ACGTTTTTGGCCCA 11323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151497681012720