Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq601 127 1e-24 seq508 122 5e-23 seq4634 118 6e-22 seq5883 114 7e-21 seq19776 113 2e-20 seq17829 113 2e-20 seq14360 113 2e-20 >seq601 Length=129108 Score = 127 bits (140), Expect = 1e-24 Identities = 89/102 (87%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||| | | ||| || ||||| | |||||||||||||| |||||||||| |||||||| Sbjct 29317 GAATTTTCGAAAAAAAAAAAATTAAAATTGGCCCATGAGGGGATCGAACCCGCGACCTTC 29258 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||||||||||||||||||| Sbjct 29257 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 29216 Score = 122 bits (134), Expect = 5e-23 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | || ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 33691 AAAAATTTAAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 33632 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 33631 GCTCTAACCAACTGAGCTAATGGGCC 33606 >seq508 Length=141276 Score = 122 bits (134), Expect = 5e-23 Identities = 86/99 (87%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 ||| | ||| | ||||||| || |||||||||| |||||||||| ||||||||||| Sbjct 37227 ATAAAAAATATAAAAAAAATTAATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCG 37286 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| |||||||||||||||||||| Sbjct 37287 TTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 37325 >seq4634 Length=29185 Score = 118 bits (130), Expect = 6e-22 Identities = 89/103 (86%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||| || | |||| ||||| || |||||||||| |||||||||| ||||||||| Sbjct 22560 AAAT-TAAAGTTAA-AAAAATTCCTTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 22617 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||||||||||| |||||||||||||||||||||| Sbjct 22618 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 22660 >seq5883 Length=22155 Score = 114 bits (126), Expect = 7e-21 Identities = 79/90 (88%), Gaps = 4/90 (4%) Strand=Plus/Minus Query 11444 AAAAAATCAAATT----GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||| || |||| ||||||||| |||||||||| |||||||||||||||||||| Sbjct 10759 AAAAAGTCGAATTATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 10700 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 10699 CGACGCTCTAACCAACTGAGCTAATGGGCC 10670 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 15946 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 15887 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 15886 TGAGCTAATGGGCC 15873 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 16503 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 16444 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 16443 TGAGCTAATGGGCC 16430 Score = 109 bits (120), Expect = 3e-19 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 11458 GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTG 11517 |||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 20825 GCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTG 20766 Query 11518 AGCTAATGGGCC 11529 |||||||||||| Sbjct 20765 AGCTAATGGGCC 20754 >seq19776 Length=1421 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 433 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 492 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 493 TGAGCTAATGGGCC 506 >seq17829 Length=1530 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1205 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1264 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1265 TGAGCTAATGGGCC 1278 >seq14360 Length=1858 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 148 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 207 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 208 TGAGCTAATGGGCC 221 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261389345908960