Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq749 120 3e-22 >seq749 Length=113903 Score = 120 bits (132), Expect = 3e-22 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGG 94850 ||||| |||||||| | ||||||||||||||| | ||| |||||| || || || | Sbjct 496 CGCAATACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCGGACAAGGTACGTCCG 555 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 || |||| || || ||| | |||||||| | ||| ||||||||||||||||| || | Sbjct 556 --TCTTCCAATTGCTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCCTCCT 613 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||||||||| || ||| | | || || | | || || || | || | Sbjct 614 TGTCCTGAATTTTTGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAA 673 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || || | |||||| || ||||| ||||| Sbjct 674 TTGTTTTACCCGTCAAAGTTTTAACGAAGATTTGCAT 710 Score = 113 bits (124), Expect = 4e-20 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGG 94850 ||||| |||||||| | |||||| || ||||| | ||| |||||| || || || | Sbjct 40 CGCAATACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGACAAGGTACGTCCG 99 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||||| ||||| ||| | ||||| || | |||||||||||| ||||| ||||| | Sbjct 100 --TCCTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCCT 157 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | || || ||||| ||| | | || || | | || || || | || | Sbjct 158 TATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGTTCAACNTCCAAGGTAA 217 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| ||||| || || ||||| ||||| ||||| Sbjct 218 TGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 254 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||||| ||||| || | ||| |||||| || |||| || ||| Sbjct 958 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCTTCC 1017 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| ||| |||||||||| | ||| |||||||| || || ||||||||||| | | Sbjct 1018 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGA 1077 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || || || | | ||| || | | || || || | |||||||| || Sbjct 1078 ATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 1137 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || ||||| ||||| ||||| Sbjct 1138 CCAGTCAAGGTCTTCACGAAGATTTGCAT 1166 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 || || || | ||| ||||||||||| | ||||| ||| || ||| ||||||| Sbjct 730 ACTAAATGTAGAGTGGATTCCTTTTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCC 789 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||| || | || || || | ||| |||||||| || || ||||| || || | | Sbjct 790 AACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGA 849 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| || ||||| | | || || | | || || || | |||||||||||| Sbjct 850 ATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTT 909 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || | |||||| || || |||||||||| Sbjct 910 CCCGTCAAAGTTTTGACGAAAATCTGCATGC 940 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||| | |||||| ||||| || | ||| || ||| || ||| Sbjct 268 CGCAATACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTGCGTCCG 327 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| || || ||| | ||||| || | ||| ||||||||||||||||| || || Sbjct 328 TCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGAGGAATACCCTCCTTA 387 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| | | || || | | || || || | |||||| Sbjct 388 TCTTGGATCTTGGCCTTTACGTTCTCAATGGTATCTGAAGGCTCAACTTCCAAAGTGATG 447 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || || || ||||| ||||| Sbjct 448 GTTTTGCCGGTGAGGGTCTTTACGAAGATTTGCAT 482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448112107665600