Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq5517 125 7e-25 seq3824 122 9e-24 seq28873 111 2e-20 seq6872 102 8e-18 seq3695 100 3e-17 >seq5517 Length=23934 Score = 125 bits (138), Expect = 7e-25 Identities = 135/176 (77%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||| |||||||||| ||| ||| | |||||||||||| |||||||||||| || | Sbjct 8049 TTTTTGGGAATAACTTCTAAACGGCTATGTCGATCAATTCCATAAACTAATCAGCACTCA 8108 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 || | | ||||||||| ||||| || | || | ||||||||||| | ||| | | || Sbjct 8109 ACCTAACAAAACCACGCCGATTACCGCAAACCGGGTCAAAATCGATCAATTTTCTTGTGA 8168 Query 15612 GATATCGTGAACGAAAGAAAACCGAAAAAATTG-TTTTTTCGGGATTACTCCGAAA 15666 || ||||| ||||||| ||| || |||||| | |||||| | || |||| |||| Sbjct 8169 GAAATCGTTGACGAAAG-AAATCGCAAAAATCGATTTTTTTGAAATAACTCAGAAA 8223 Score = 86.0 bits (94), Expect = 6e-13 Identities = 102/136 (75%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||||| ||||||| ||| ||| |||||| |||| || ||||||||||| | Sbjct 8203 TTTTTTGAAATAACTCAGAAACGACTCGACCGATTCATTCTGAAGACTAATCAGCTGTCG 8262 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 || || | || |||||| ||| | || | ||||||||||| |||||| ||||| || Sbjct 8263 AC-TCTGATGGCC--GTCGATGGCCGCAAACCGGGTCAAAATCGATTGATTTGTTCGTGA 8319 Query 15612 GATATCGTGAACGAAA 15627 |||||||| |||||| Sbjct 8320 GATATCGTTGACGAAA 8335 Score = 82.4 bits (90), Expect = 8e-12 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 1090 CATTCGAAAGGGCTTCACTAAACTTAGATTTCCTGAAAATTTGAACCGATTCGGACCGGT 1149 |||| || | | |||||| ||||||||||| || ||| |||| |||||||||| |||| Sbjct 7936 CATTTTAATGAGTTTCACTCAACTTAGATTTTCTAAAATATTGAGCCGATTCGGATCGGT 7995 Query 1150 AGATTTCGAGAAAATACA 1167 ||||||||||||||| || Sbjct 7996 AGATTTCGAGAAAATTCA 8013 >seq3824 Length=35410 Score = 122 bits (134), Expect = 9e-24 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 15493 TTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTAA 15552 |||||| ||||||| | ||| |||||||||| ||||| || ||||||||||| | | Sbjct 2153 TTTTTGAAATAACTCTGAAACGACTCTACCGATTAATTCTGAAGACTAATCAGCTTTCGA 2212 Query 15553 CATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGAG 15612 | ||||| ||||||||| ||| | || | |||||||||||||||||| ||||| ||| Sbjct 2213 CTCTGAAAAATCACGTCGATGGCCCCAAACCGGGTCAAAATCGGTTGATTTGTTCGTGAG 2272 Query 15613 ATATCGTGAACGAAA 15627 ||||||| |||||| Sbjct 2273 ATATCGTTGACGAAA 2287 Score = 98.7 bits (108), Expect = 1e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||| |||||||||| ||| | | || |||||||||||| |||||||||||| || | Sbjct 2048 TTTTTGGGAATAACTTATAAACGGTTATATCGATCAATTCCATAAACTAATCAGCACTCA 2107 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTT 15598 || ||| ||||| ||| ||||| || | || | ||||||||||| || Sbjct 2108 ACCTCACAAAACTACGCCGATTACCGCAAACCGGGTCAAAATCGATT 2154 Score = 89.7 bits (98), Expect = 5e-14 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1042 CCTCTTGTAACTTTTGAACGACTTGACCGATTTCATCGCAGTTAGTGTCATTCGAAAGGG 1101 || ||| ||||||||||||| | | ||||| | | | | | |||| |||| | Sbjct 1889 CCGCTTATAACTTTTGAACGGATCAAGCGATTCAACCCTACCCAACGGCATTTCAAAGAG 1948 Query 1102 CTTCACTAAACTTAGATTTCCTGAAAATTTGAACCGATTCGGACCGGTAGATTTCGAGAA 1161 |||||| ||||||||| | || ||| ||||| |||||||||| |||||||||||||||| Sbjct 1949 TTTCACTTAACTTAGATATTCTAAAATTTTGAGCCGATTCGGATCGGTAGATTTCGAGAA 2008 Query 1162 AA 1163 || Sbjct 2009 AA 2010 >seq28873 Length=1079 Score = 111 bits (122), Expect = 2e-20 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||||| || |||| | ||| ||| |||||| ||||| || ||||||||||| | Sbjct 365 TTTTTTGAAACAACTCTGAAACGACTCGACCGATTAATTCTGAAGACTAATCAGCTTTCG 306 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 | ||||| ||||||||| ||| | || | |||||||||||||||||| ||||| || Sbjct 305 ATTCTGAAAAATCACGTCGATGGCCGCAAACCGGGTCAAAATCGGTTGATTTGTTCGTGA 246 Query 15612 GATATCGTGAACGAAA 15627 |||||||| |||||| Sbjct 245 GATATCGTTGACGAAA 230 Score = 100 bits (110), Expect = 3e-17 Identities = 189/271 (70%), Gaps = 13/271 (5%) Strand=Plus/Minus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||| |||||||||| ||| ||| || |||||| || || |||||||||||| | | Sbjct 519 TTTTTGGGAATAACTTCTAAACGGCTATATCGATCACTTACATAAACTAATCAGCATTCA 460 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 || || ||||| ||| ||||| || || | ||||||||||| | ||| | | || Sbjct 459 ACCACACAAAACTACGCCGATTACCGTAAACCGGGTCAAAATCGATCAATTTTCTTGCGA 400 Query 15612 GATATCGTGAACGAAAGAAAACCGAAAAAATTG-TTTTTTCGGGATTACTCCGAAATTTT 15670 || ||||| ||||||| ||| || ||||| | |||||| | | |||| |||| Sbjct 399 GAAATCGTAGACGAAAG-AAATCGCCAAAATCGATTTTTTTGAAACAACTCTGAAA---- 345 Query 15671 CGGTTCGATCAATTAAAACCTGAA----AAT-AACTTATGAGGATGATAAAACTGCGTCG 15725 || |||| | ||| || ||||| ||| | ||| || ||| |||| ||||| Sbjct 344 CGACTCGACCGATT-AATTCTGAAGACTAATCAGCTTTCGATTCTGA-AAAATCACGTCG 287 Query 15726 AATGGCACCAACCGCGTGGAAATTGGTTGAT 15756 | | | | ||||| || |||| ||||||| Sbjct 286 ATGGCCGCAAACCGGGTCAAAATCGGTTGAT 256 >seq6872 Length=17868 Score = 102 bits (112), Expect = 8e-18 Identities = 119/159 (75%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||| |||||||||| ||| ||| | | |||||||| |||||||||||| || | Sbjct 4003 TTTTTGGGAATAACTTCTAAACGGCTATGTC---CAATTCCATAAACTAATCAGCACTCA 3947 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 || ||| ||||| ||| ||||| || | || | ||||||||||| | ||| | | || Sbjct 3946 ACCTCACAAAACTACGCCGATTACCGCAAACCGGGTCAAAATCGATCAATTTTCTTGCGA 3887 Query 15612 GATATCGTGAACGAAAGAAAACCGAAAAAATTGTTTTTT 15650 || |||| ||||||| ||| || |||||| | ||||| Sbjct 3886 GAAATCGCTGACGAAAG-AAATCGCAAAAATAGATTTTT 3849 Score = 100 bits (110), Expect = 3e-17 Identities = 105/136 (77%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||||| ||||||| | | | ||| |||||| ||||| || ||| ||||||| | Sbjct 3852 TTTTTTGAAATAACT--CGACGA-CTCGACCGATTAATTCTGAAGACTTATCAGCTTTCG 3796 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 || ||||| ||||||||| ||| | || | ||||||||||| |||||| ||||| || Sbjct 3795 ACTCTGAAAAATCACGTCGATGGCCGCAAACCGGGTCAAAATCGATTGATTTGTTCGTGA 3736 Query 15612 GATATCGTGAACGAAA 15627 |||||||| |||||| Sbjct 3735 GATATCGTTGACGAAA 3720 >seq3695 Length=36609 Score = 100 bits (110), Expect = 3e-17 Identities = 104/136 (76%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||||| ||||||| | ||| ||| |||||| ||||| | || ||||||| | Sbjct 3449 TTTTTTGAAATAACTCTGAAACGACTCGACCGATTAATTCTGA---CTTATCAGCTTTCG 3505 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 || ||||| ||||||||| ||| | || | ||||||||||||||||| ||||| || Sbjct 3506 ACTCTGAAAAATCACGTCGATGGCCGCAAACCGTGTCAAAATCGGTTGATTTGTTCGTGA 3565 Query 15612 GATATCGTGAACGAAA 15627 |||||||| |||||| Sbjct 3566 GATATCGTTGACGAAA 3581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50931571916560