Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_006646.1 Length=31972 Score E Sequences producing significant alignments: (Bits) Value seq3824 96.9 7e-16 seq5517 86.0 1e-12 seq28873 84.2 4e-12 >seq3824 Length=35410 Score = 96.9 bits (106), Expect = 7e-16 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 22927 TTTGGAATAACTTTTTAATGACTTTACCGATCGATTCCAAAAACTAATCAGCCCTTAACC 22986 |||| ||||||| | || |||| ||||||| |||| || |||||||||| | || Sbjct 2155 TTTGAAATAACTCTGAAACGACTCTACCGATTAATTCTGAAGACTAATCAGCTTTCGACT 2214 Query 22987 TCGAAAAACCACGTCGATTGCCACCGGCCCGGCCAGAATCGGTTGATTCGTTCCGGAGAT 23046 |||||| ||||||||| ||| | || || || |||||||||||| |||| ||||| Sbjct 2215 CTGAAAAATCACGTCGATGGCCCCAAACCGGGTCAAAATCGGTTGATTTGTTCGTGAGAT 2274 Query 23047 ATCGTTGTCGA 23057 ||||||| ||| Sbjct 2275 ATCGTTGACGA 2285 Score = 84.2 bits (92), Expect = 4e-12 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 22900 AAAATAAAATTTTCAAACAAAGGTTCATTTGGAATAACTTTTTAATGACTTTACCGATCG 22959 |||| ||| |||| || | |||| || |||||||||| | || | | || ||||| Sbjct 2024 AAAAAAAATTTTTTTAATAGTGGTTTTTTGGGAATAACTTATAAACGGTTATATCGATCA 2083 Query 22960 ATTCCAAAAACTAATCAGCCCTTAACCTCGAAAAACCACGTCGATTGCCACCGGCCCGGC 23019 |||||| |||||||||||| || |||||| ||||| ||| ||||| || | || || Sbjct 2084 ATTCCATAAACTAATCAGCACTCAACCTCACAAAACTACGCCGATTACCGCAAACCGGGT 2143 Query 23020 CAGAATCGGTT 23030 || ||||| || Sbjct 2144 CAAAATCGATT 2154 >seq5517 Length=23934 Score = 86.0 bits (94), Expect = 1e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 22908 ATTTTCAAACAAAGGTTCATTTGG-AATAACTTTTTAATGACTTTACCGATCGATTCCAA 22966 ||||||||| | |||| ||||| |||||||| | || | || | ||||| |||||| Sbjct 8033 ATTTTCAAA-AGTGGTTTTTTTGGGAATAACTTCTAAACGGCTATGTCGATCAATTCCAT 8091 Query 22967 AAACTAATCAGCCCTTAACCTCGAAAAACCACGTCGATTGCCACCGGCCCGGCCAGAATC 23026 |||||||||||| || ||||| ||||||||| ||||| || | || || || |||| Sbjct 8092 AAACTAATCAGCACTCAACCTAACAAAACCACGCCGATTACCGCAAACCGGGTCAAAATC 8151 Query 23027 GGTTGATTCGTTCCGGAGATATCGTTGTCGA 23057 | | ||| | |||| ||||||| ||| Sbjct 8152 GATCAATTTTCTTGTGAGAAATCGTTGACGA 8182 >seq28873 Length=1079 Score = 84.2 bits (92), Expect = 4e-12 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 22927 TTTGGAATAACTTTTTAATGACTTTACCGATCGATTCCAAAAACTAATCAGCCCTTAACC 22986 |||| || |||| | || |||| |||||| |||| || |||||||||| | | Sbjct 362 TTTGAAACAACTCTGAAACGACTCGACCGATTAATTCTGAAGACTAATCAGCTTTCGATT 303 Query 22987 TCGAAAAACCACGTCGATTGCCACCGGCCCGGCCAGAATCGGTTGATTCGTTCCGGAGAT 23046 |||||| ||||||||| ||| | || || || |||||||||||| |||| ||||| Sbjct 302 CTGAAAAATCACGTCGATGGCCGCAAACCGGGTCAAAATCGGTTGATTTGTTCGTGAGAT 243 Query 23047 ATCGTTGTCGA 23057 ||||||| ||| Sbjct 242 ATCGTTGACGA 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102150016795680