Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_006659.1 Length=41573 Score E Sequences producing significant alignments: (Bits) Value seq5517 120 8e-23 seq3824 114 3e-21 seq28873 105 2e-18 seq3695 95.1 3e-15 seq6872 93.3 1e-14 >seq5517 Length=23934 Score = 120 bits (132), Expect = 8e-23 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189 |||||||||| ||||||||| | |||| ||||||| |||||||| ||| || ||| | | Sbjct 8055 GGAATAACTTCTAAACGGCTATGTCGATCAATTCCATAAACTAATCAGCACTCAACCTAA 8114 Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249 |||||||| ||||| | | | || |||||| |||| | ||| | ||||| ||| Sbjct 8115 CAAAACCACGCCGATTACCGCAAACCGGGTCAAAATCGATCAATTTTCTTGTGAGAAATC 8174 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAA 40298 |||||||||||||| | ||||| |||||| | ||| |||| |||| Sbjct 8175 GTTGACGAAAGAAATCGCAAAAATCGATTTTTTTGAAATAACTCAGAAA 8223 Score = 80.6 bits (88), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191 ||||||| ||||| || ||||||| |||| || |||||| |||| | || | || Sbjct 8211 AATAACTCAGAAACGACTCGACCGATTCATTCTGAAGACTAATCAGCTGTCGACTCTGAT 8270 Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGT 40251 | |||||| || | | || |||||| |||| |||||| ||||||||| |||||| Sbjct 8271 GGCC---GTCGATGGCCGCAAACCGGGTCAAAATCGATTGATTTGTTCGTGAGATATCGT 8327 Query 40252 TGACGAAA 40259 |||||||| Sbjct 8328 TGACGAAA 8335 >seq3824 Length=35410 Score = 114 bits (126), Expect = 3e-21 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191 ||||||| | ||||| || ||||||||||||| || |||||| |||| | || | | Sbjct 2160 AATAACTCTGAAACGACTCTACCGATTAATTCTGAAGACTAATCAGCTTTCGACTCTGAA 2219 Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGT 40251 ||| ||||||||| || | || |||||| ||||||||||| ||||||||| |||||| Sbjct 2220 AAATCACGTCGATGGCCCCAAACCGGGTCAAAATCGGTTGATTTGTTCGTGAGATATCGT 2279 Query 40252 TGACGAAA 40259 |||||||| Sbjct 2280 TGACGAAA 2287 >seq28873 Length=1079 Score = 105 bits (116), Expect = 2e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191 || |||| | ||||| || |||||||||||| || |||||| |||| | | | | Sbjct 357 AACAACTCTGAAACGACTCGACCGATTAATTCTGAAGACTAATCAGCTTTCGATTCTGAA 298 Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGT 40251 ||| ||||||||| || | | || |||||| ||||||||||| ||||||||| |||||| Sbjct 297 AAATCACGTCGATGGCCGCAAACCGGGTCAAAATCGGTTGATTTGTTCGTGAGATATCGT 238 Query 40252 TGACGAAA 40259 |||||||| Sbjct 237 TGACGAAA 230 Score = 89.7 bits (98), Expect = 1e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189 |||||||||| ||||||||| || |||| | || || |||||||| ||| | ||| | Sbjct 513 GGAATAACTTCTAAACGGCTATATCGATCACTTACATAAACTAATCAGCATTCAACCACA 454 Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249 |||| ||| ||||| | || | || |||||| |||| | ||| | | ||| ||| Sbjct 453 CAAAACTACGCCGATTACCGTAAACCGGGTCAAAATCGATCAATTTTCTTGCGAGAAATC 394 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAA 40298 || ||||||||||| | |||| |||||| | || |||| |||| Sbjct 393 GTAGACGAAAGAAATCGCCAAAATCGATTTTTTTGAAACAACTCTGAAA 345 >seq3695 Length=36609 Score = 95.1 bits (104), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191 ||||||| | ||||| || |||||||||||| | || || |||| | || | | Sbjct 3457 AATAACTCTGAAACGACTCGACCGATTAATTCTGA---CTTATCAGCTTTCGACTCTGAA 3513 Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGT 40251 ||| ||||||||| || | | || ||||| ||||||||||| ||||||||| |||||| Sbjct 3514 AAATCACGTCGATGGCCGCAAACCGTGTCAAAATCGGTTGATTTGTTCGTGAGATATCGT 3573 Query 40252 TGACGAAA 40259 |||||||| Sbjct 3574 TGACGAAA 3581 >seq6872 Length=17868 Score = 93.3 bits (102), Expect = 1e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40144 ACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAATAAACCACGTCGA 40203 ||| || |||||||||||| || ||| || |||| | || | | ||| |||||||| Sbjct 3835 ACGACTCGACCGATTAATTCTGAAGACTTATCAGCTTTCGACTCTGAAAAATCACGTCGA 3776 Query 40204 TTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGTTGACGAAA 40259 | || | | || |||||| |||| |||||| ||||||||| |||||||||||||| Sbjct 3775 TGGCCGCAAACCGGGTCAAAATCGATTGATTTGTTCGTGAGATATCGTTGACGAAA 3720 Score = 87.8 bits (96), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189 |||||||||| ||||||||| | | | |||||| |||||||| ||| || ||| | | Sbjct 3997 GGAATAACTTCTAAACGGCTATGTCCA---ATTCCATAAACTAATCAGCACTCAACCTCA 3941 Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249 |||| ||| ||||| | | | || |||||| |||| | ||| | | ||| ||| Sbjct 3940 CAAAACTACGCCGATTACCGCAAACCGGGTCAAAATCGATCAATTTTCTTGCGAGAAATC 3881 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTC 40293 | |||||||||||| | ||||| |||||| | ||| |||| Sbjct 3880 GCTGACGAAAGAAATCGCAAAAATAGATTTTTTTGAAATAACTC 3837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132861556573200