Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21]
31,960 sequences; 519,005,690 total letters
Query= NC_006659.1
Length=41573
Score E
Sequences producing significant alignments: (Bits) Value
seq5517 120 8e-23
seq3824 114 3e-21
seq28873 105 2e-18
seq3695 95.1 3e-15
seq6872 93.3 1e-14
>seq5517
Length=23934
Score = 120 bits (132), Expect = 8e-23
Identities = 128/169 (76%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189
|||||||||| ||||||||| | |||| ||||||| |||||||| ||| || ||| | |
Sbjct 8055 GGAATAACTTCTAAACGGCTATGTCGATCAATTCCATAAACTAATCAGCACTCAACCTAA 8114
Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249
|||||||| ||||| | | | || |||||| |||| | ||| | ||||| |||
Sbjct 8115 CAAAACCACGCCGATTACCGCAAACCGGGTCAAAATCGATCAATTTTCTTGTGAGAAATC 8174
Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAA 40298
|||||||||||||| | ||||| |||||| | ||| |||| ||||
Sbjct 8175 GTTGACGAAAGAAATCGCAAAAATCGATTTTTTTGAAATAACTCAGAAA 8223
Score = 80.6 bits (88), Expect = 7e-11
Identities = 95/128 (74%), Gaps = 3/128 (2%)
Strand=Plus/Plus
Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191
||||||| ||||| || ||||||| |||| || |||||| |||| | || | ||
Sbjct 8211 AATAACTCAGAAACGACTCGACCGATTCATTCTGAAGACTAATCAGCTGTCGACTCTGAT 8270
Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGT 40251
| |||||| || | | || |||||| |||| |||||| ||||||||| ||||||
Sbjct 8271 GGCC---GTCGATGGCCGCAAACCGGGTCAAAATCGATTGATTTGTTCGTGAGATATCGT 8327
Query 40252 TGACGAAA 40259
||||||||
Sbjct 8328 TGACGAAA 8335
>seq3824
Length=35410
Score = 114 bits (126), Expect = 3e-21
Identities = 102/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191
||||||| | ||||| || ||||||||||||| || |||||| |||| | || | |
Sbjct 2160 AATAACTCTGAAACGACTCTACCGATTAATTCTGAAGACTAATCAGCTTTCGACTCTGAA 2219
Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGT 40251
||| ||||||||| || | || |||||| ||||||||||| ||||||||| ||||||
Sbjct 2220 AAATCACGTCGATGGCCCCAAACCGGGTCAAAATCGGTTGATTTGTTCGTGAGATATCGT 2279
Query 40252 TGACGAAA 40259
||||||||
Sbjct 2280 TGACGAAA 2287
>seq28873
Length=1079
Score = 105 bits (116), Expect = 2e-18
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191
|| |||| | ||||| || |||||||||||| || |||||| |||| | | | |
Sbjct 357 AACAACTCTGAAACGACTCGACCGATTAATTCTGAAGACTAATCAGCTTTCGATTCTGAA 298
Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGT 40251
||| ||||||||| || | | || |||||| ||||||||||| ||||||||| ||||||
Sbjct 297 AAATCACGTCGATGGCCGCAAACCGGGTCAAAATCGGTTGATTTGTTCGTGAGATATCGT 238
Query 40252 TGACGAAA 40259
||||||||
Sbjct 237 TGACGAAA 230
Score = 89.7 bits (98), Expect = 1e-13
Identities = 121/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189
|||||||||| ||||||||| || |||| | || || |||||||| ||| | ||| |
Sbjct 513 GGAATAACTTCTAAACGGCTATATCGATCACTTACATAAACTAATCAGCATTCAACCACA 454
Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249
|||| ||| ||||| | || | || |||||| |||| | ||| | | ||| |||
Sbjct 453 CAAAACTACGCCGATTACCGTAAACCGGGTCAAAATCGATCAATTTTCTTGCGAGAAATC 394
Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAA 40298
|| ||||||||||| | |||| |||||| | || |||| ||||
Sbjct 393 GTAGACGAAAGAAATCGCCAAAATCGATTTTTTTGAAACAACTCTGAAA 345
>seq3695
Length=36609
Score = 95.1 bits (104), Expect = 3e-15
Identities = 98/128 (77%), Gaps = 3/128 (2%)
Strand=Plus/Plus
Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191
||||||| | ||||| || |||||||||||| | || || |||| | || | |
Sbjct 3457 AATAACTCTGAAACGACTCGACCGATTAATTCTGA---CTTATCAGCTTTCGACTCTGAA 3513
Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGT 40251
||| ||||||||| || | | || ||||| ||||||||||| ||||||||| ||||||
Sbjct 3514 AAATCACGTCGATGGCCGCAAACCGTGTCAAAATCGGTTGATTTGTTCGTGAGATATCGT 3573
Query 40252 TGACGAAA 40259
||||||||
Sbjct 3574 TGACGAAA 3581
>seq6872
Length=17868
Score = 93.3 bits (102), Expect = 1e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 40144 ACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAATAAACCACGTCGA 40203
||| || |||||||||||| || ||| || |||| | || | | ||| ||||||||
Sbjct 3835 ACGACTCGACCGATTAATTCTGAAGACTTATCAGCTTTCGACTCTGAAAAATCACGTCGA 3776
Query 40204 TTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGTTGACGAAA 40259
| || | | || |||||| |||| |||||| ||||||||| ||||||||||||||
Sbjct 3775 TGGCCGCAAACCGGGTCAAAATCGATTGATTTGTTCGTGAGATATCGTTGACGAAA 3720
Score = 87.8 bits (96), Expect = 5e-13
Identities = 118/164 (72%), Gaps = 3/164 (2%)
Strand=Plus/Minus
Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189
|||||||||| ||||||||| | | | |||||| |||||||| ||| || ||| | |
Sbjct 3997 GGAATAACTTCTAAACGGCTATGTCCA---ATTCCATAAACTAATCAGCACTCAACCTCA 3941
Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249
|||| ||| ||||| | | | || |||||| |||| | ||| | | ||| |||
Sbjct 3940 CAAAACTACGCCGATTACCGCAAACCGGGTCAAAATCGATCAATTTTCTTGCGAGAAATC 3881
Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTC 40293
| |||||||||||| | ||||| |||||| | ||| ||||
Sbjct 3880 GCTGACGAAAGAAATCGCAAAAATAGATTTTTTTGAAATAACTC 3837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132861556573200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |