Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq225 176 5e-39 >seq225 Length=233467 Score = 176 bits (194), Expect = 5e-39 Identities = 447/678 (66%), Gaps = 12/678 (2%) Strand=Plus/Minus Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 ||| || |||||||| ||||| | |||||| || |||||||||||||| || || || Sbjct 26879 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 26820 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429 || | ||| | || || || | || || || |||||| |||||| | | Sbjct 26819 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 26760 Query 21430 TATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACA 21489 || | |||| || | | ||| |||| |||||||||||||| || ||||| Sbjct 26759 AATTCGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCACA 26700 Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549 ||| | || ||||| | |||| |||||| |||||||| || || |||||||| || Sbjct 26699 ATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAACC 26640 Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAACG 21607 | || || | ||| || || || ||||| ||| ||||| |||||| || |||||| Sbjct 26639 ACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAA--GAAAATACCTTCAACG 26582 Query 21608 GCAGCAAATGCAACTAATCGTTCACC---GTATGTAGATTCTTTATCCAATATCCATTTT 21664 ||||||||||||| || |||||||| || | || ||| || ||||| Sbjct 26581 GCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGA--CTTCGAGGAA-ATCCAAGCA 26525 Query 21665 TCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATG 21723 ||||| | |||||| ||||| || | ||||| || ||||| || || | | Sbjct 26524 AGCGCCCAATCTGCCTTACGCTTTACGGCAGGC-ATTGTCTCTATAGCATTGAATAAGTA 26466 Query 21724 AtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATG 21783 ||| ||| | || | || ||||||||||||||||| Sbjct 26465 ATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATG 26406 Query 21784 TATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC 21843 | ||| || ||||| || |||||||| || || || | |||||||| ||| || || Sbjct 26405 CACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTC 26346 Query 21844 GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGC 21903 | || |||| | | | |||||||| || || |||||| ||||| ||||| || Sbjct 26345 CTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGC 26286 Query 21904 CAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATC 21963 || | | | ||||||| |||||| ||||| |||| | |||||| | ||| Sbjct 26285 TAACACGTGTGAAATAAAATGTCGTTCATTATCAGTTAGACGTGCCCAATCATCCATATC 26226 Query 21964 TTTTGATAAATCTACTTC 21981 ||| || | ||||||||| Sbjct 26225 TTTAGAAAGATCTACTTC 26208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531688305630400