Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21]
31,960 sequences; 519,005,690 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq112 156 3e-33
seq749 147 1e-30
seq609 125 5e-24
seq2732 107 1e-18
seq1128 96.9 2e-15
>seq112
Length=356606
Score = 156 bits (172), Expect = 3e-33
Identities = 157/202 (78%), Gaps = 4/202 (2%)
Strand=Plus/Plus
Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233
|| || ||||||||||| | ||| |||||||| || |||||||| ||| | ||
Sbjct 122726 AATGTGAATCGTAATGTCACCGACATTTTCTACCGTTATAAAATGCCACGCTTGCAAGCT 122785
Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293
||||||||||| || || ||||| || |||||||| ||||| || ||| ||||||| ||
Sbjct 122786 AAGGTCGAGGGCAAAGGTAACGGCATCAAAACCGTTATTGTTAATATGGCTGAAGTGGC- 122844
Query 6294 AAGGCGC--TCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351
| |||| ||||||| || |||||||||||||| || ||||| || |||||| | ||||
Sbjct 122845 -ACGCGCCATCGGACGTCCGGCCACCTACCCGACCAAGTATTTTGGCTGCGAATTGGGCG 122903
Query 6352 CTCAGACGCAGTTTGATCACAA 6373
|||| || || ||||| ||||
Sbjct 122904 CTCAAACACAATTTGACTACAA 122925
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
|| || || |||||||| || || || || | | ||| ||||||| | || ||
Sbjct 123008 AATGAACGTTTCATCGTAAATGGCTCCCACGATGCCAGCAAATTGCAGGATCTGCTCGAT 123067
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494
|| || || ||||| || || |||| | ||||||||| || ||||||||||| | |
Sbjct 123068 GGTTTCATACGCAAATTCGTCTTGTGCCCGGAATGCGACAATCCGGAGACCGATTTAACC 123127
Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554
|| || | |||| | ||||| || || | |||||||| ||||||| |||||
Sbjct 123128 GTCTCGGCTAAGAATCAAACCATTTCGCAAGCATGCAAAGCTTGCGGTTTTCATGGTCTC 123187
Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602
| | | ||||| | ||||| ||||| |||||||||| |||
Sbjct 123188 TTAAAAGTCAATCACAAGGTTAACACGTTCATTTTGAAGAATCCGCCA 123235
>seq749
Length=113903
Score = 147 bits (162), Expect = 1e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | |||||| ||||| |||||||| |||||||| || |||||||| |
Sbjct 482 TACCACCGCGGAGACGCAATACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCGG 541
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| |||| |||| || ||||| || ||||| || |||| ||||||||||| | |
Sbjct 542 ACAAGGTACGTCCGTCTTCCAATTGCTTACCGGCGAAGATTAAACGTTGTTGATCTGGAG 601
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | || || |||||| ||||||| || || || | | ||||| | |||||
Sbjct 602 GAATACCCTCCTTGTCCTGAATTTTTGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAA 661
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | ||||| |||||||||||||| ||||| ||||| || |||||
Sbjct 662 CCTCCAGAGTAATTGTTTTACCCGTCAAAGTTTTAACGAAGATTTGCAT 710
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | ||||||||||| || |||||| || || |||||||| |||
Sbjct 940 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 999
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | ||| |||| || | |||||| |||||||| |||| ||||||||||| | ||||
Sbjct 1000 AGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGG 1059
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||||||||| ||| || || ||||| | | |||||| ||||||
Sbjct 1060 ATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACC 1119
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | || || || || || |||||||| |||||||| || ||||| ||
Sbjct 1120 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 1169
Score = 122 bits (134), Expect = 6e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | || || | || ||||| |||||| |||||||||||||| || || |
Sbjct 710 TACCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTTTGAATATTATAGTCGG 769
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| ||| | || || || ||||| || || || || | ||||||||||| | ||
Sbjct 770 ACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGG 829
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||| || || |||||| || ||||||| | ||||| | ||||
Sbjct 830 GGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAA 889
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
| || || || || ||||| |||||||| ||||| ||||| |||||||||
Sbjct 890 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 939
Score = 104 bits (114), Expect = 2e-17
Identities = 163/232 (70%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| ||||| | | |||||| ||||| |||||||| |||||| || || ||||| |
Sbjct 252 CATT-CCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGT 310
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
| ||||| ||| |||| || ||||| || ||||| || || | ||||||||||| |
Sbjct 311 CGGACAATGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTG 370
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | || || || || || || ||| || |||| | |||||| | |
Sbjct 371 GAGGAATACCCTCCTTATCTTGGATCTTGGCCTTTACGTTCTCAATGGTATCTGAAGGCT 430
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||||| || || || ||||| || || | ||| || ||||| || |||||
Sbjct 431 CAACTTCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTTACGAAGATTTGCAT 482
>seq609
Length=128410
Score = 125 bits (138), Expect = 5e-24
Identities = 167/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||||| |||||||| || || ||||||||| || ||||| || |
Sbjct 92972 TACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGG 92913
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| ||| | || || |||||||||||||| || || | || |||||||| | ||
Sbjct 92912 ACAAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGG 92853
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || |||||||| ||||| || ||||| | || || || | || |
Sbjct 92852 GGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGA 92793
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
| ||||| || || || ||||| || |||||||| ||||| |||||||| ||
Sbjct 92792 CCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 92741
>seq2732
Length=47336
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | ||| | || ||||| | || ||| || |||||||| || |||| |
Sbjct 1606 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 1665
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| || | || || ||||| ||||||||||| ||||| || |||||||| | ||
Sbjct 1666 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGCGGA 1725
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| || || |||||| ||| |||| | | |||||| | |||||
Sbjct 1726 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACC 1785
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || |||||||| | |||||| |||||||| |||||
Sbjct 1786 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAATATTTGCAT 1832
>seq1128
Length=88325
Score = 96.9 bits (106), Expect = 2e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||| | ||||||||| || || ||||| || |||||||| || |||||| |||| |
Sbjct 326 ACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCC 267
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || | ||| || ||||| || || | ||||||||||| | |||| || || ||
Sbjct 266 ATCCTCAAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTT 207
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
|| ||||| || ||||||| | ||||| | |||||||| || || ||
Sbjct 206 ATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCCGAAGGCTCAACTTCCAAGGTGAT 147
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || || | || |||||||| || |||||
Sbjct 146 TGTTTTGCCGGTGAGAGTCTTCACGAAGATTTGCAT 111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334816733878760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |