Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2732 141 8e-29 seq749 129 5e-25 >seq2732 Length=47336 Score = 141 bits (156), Expect = 8e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 ||||||||||||| ||||| || | || ||||| ||||||| | || || ||| | | Sbjct 1834 CAATGCAAATATTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTT 1775 Query 25057 CTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 | || ||||| || | ||| | |||| ||| || || ||||| ||||| ||||| Sbjct 1774 CGGATACTATTGAACATGTTAAGGCCAAAATTCAA-GATAAGGAAGGAATTCCGCCTGAT 1716 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | ||||||||||| || ||||| ||||||| |||||| ||| || || Sbjct 1715 CAACAGCGTCTAATTTTTGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTAT 1656 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| ||||| || || | |||||||| || | || ||||| || Sbjct 1655 AATATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGG 1606 >seq749 Length=113903 Score = 129 bits (142), Expect = 5e-25 Identities = 160/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || |||||||| || ||| ||||||| | || || ||| | || Sbjct 938 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 879 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || |||| |||| ||| || || ||||| || || || || Sbjct 878 GATACCATTGAG--AATGTCAAAGCTAAAATTCAA-GATAAGGAAGGAATCCCCCCAGAT 822 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | ||||| || |||||||| || || |||| ||||| || ||| || Sbjct 821 CAACAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTAT 762 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 ||||||||||| |||||||| ||||||||||| ||| Sbjct 761 AATATTCAAAAGGAATCCACTCTACATTTAGTTCTA 726 Score = 111 bits (122), Expect = 1e-19 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||| || || ||||||| | || || || | || Sbjct 1167 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATC 1108 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || | || |||| || | ||| ||||||||||| || || || || Sbjct 1107 CGATACTATTGAA--AATGTTAAAGCTAAGATTCAA-GACAAAGAAGGAATCCCCCCAGA 1051 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || |||||||| |||||| | ||||| | |||||| || |||||| Sbjct 1050 TCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTA 991 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || ||||| || || Sbjct 990 CAACATCCAGAAGGAGTCTACACTTCATTTGGTTCT 955 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| | || || ||| |||| || | || || || | || Sbjct 255 AATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATTACCTTGGANGTTGAACCTTC 196 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | ||| || ||| || || ||||| ||||| || || || Sbjct 195 AGATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCCCCAGATCA 136 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || |||||||||||||| || || | || || || ||||||||| Sbjct 135 GCAACGTTTGATCTTCGCCGGCAAACAATTGGAGGACGGACGTACCTTGTCCGATTACAA 76 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 || |||||||| || || || || || || Sbjct 75 CATCCAAAAAGAGTCTACTCTTCACTTGGT 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433159213327400