Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2312 116 5e-21 >seq2312 Length=53118 Score = 116 bits (128), Expect = 5e-21 Identities = 247/363 (68%), Gaps = 8/363 (2%) Strand=Plus/Plus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||||||||||||||| || | || ||||| | ||||||||| | |||| ||||| Sbjct 32139 AACCTGTGCCAATACCATCAGCACCATTCACCAAAACCATTGGTATAATTGGTATATACC 32198 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | | |||||||||| | |||||||| | || | | || || || || | Sbjct 32199 ACTGTGGTTCAATCTTTTGACCATCATCAACTTCGTACGTTAACAACGGATCGTCGGCTG 32258 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTGAGTTTT--GTGAAGATGTACCT--CGTTTGA 175921 | | || || || | || ||||| || ||||| || || | || | | Sbjct 32259 GGTGGAATATGAGTCGCG--TCAAGGGTGACATTAAGGTGAAAATATAACGAGCGCTCGC 32316 Query 175922 GACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTG 175981 || |||||| |||||| ||||| || ||||||||||||| ||||| | | ||| Sbjct 32317 -ACA-ATCTTTACCACCCTGCAGACGTGTACCAAATTGACCACGAGGCTCCAATAAATTA 32374 Query 175982 ATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACT 176041 ||||| ||||| |||| || | | |||||| ||||| || ||| || || || | Sbjct 32375 ATATTATTTGATCCCACGTAATTTTGCGCCAAATTGACTATGGTAGCCTGCAGTGACATC 32434 Query 176042 TCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATC 176101 || |||||||||||||| ||| | || |||||| | | | ||| ||||| || |||| | Sbjct 32435 TCGCCGTGATGGTAGGCGGACATTTCAGCCACAGAACCAGACAATTGCGCAACTTTCACC 32494 Query 176102 TCA 176104 ||| Sbjct 32495 TCA 32497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613262103873600