Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq609 123 6e-23 seq749 118 2e-21 seq2732 102 2e-16 seq1128 100 7e-16 >seq609 Length=128410 Score = 123 bits (136), Expect = 6e-23 Identities = 166/228 (73%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || | ||||| || ||||||||||||| ||||||||| | ||| || Sbjct 92964 CGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTA 92905 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| || |||||||||||||| | |||||| || || || || || Sbjct 92904 CGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACCC 92845 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || || ||| || || || ||||| |||||| | | || || || || Sbjct 92844 TCTTTGTCTTGGAT-TTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAA 92786 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| |||||||| || | ||||| || ||||| || |||||| Sbjct 92785 GGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTG---CATTTT 92741 >seq749 Length=113903 Score = 118 bits (130), Expect = 2e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| || |||||||||| |||||| || | ||| || | ||| ||||||| || Sbjct 507 GTGAAGAGTAGATTCCTTTTGGATGTTGTAATCGGACAAGGTACGTCCGTCTTCCAATTG 566 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||||||||| | ||| || || || ||| ||| || || |||||||| || Sbjct 567 CTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCCTCCTTGTCCTGAAT-TT 625 Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 |||| || ||| ||| | || || | | ||| || |||| || || || ||||||| Sbjct 626 TTGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTTTTACCCG 685 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 | | |||||| || || ||||| Sbjct 686 TCAAAGTTTTAACGAAGATTTG 707 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| ||||| ||||||| |||||| || | ||| || | ||| || |||| || Sbjct 51 GTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGACAAGGTACGTCCGTCCTCCAATTG 110 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || ||||||||||| | ||| ||||| || || ||| ||||| || || ||||| Sbjct 111 TTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCCTTATCTTGGATCTT 170 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| || | ||| |||| | ||| || ||||| || || || || || || Sbjct 171 AGCCTTAACGTTCTCAATGGTATCTGAAGGTTCAACNTCCAAGGTAATGGTTTTGCCAGT 230 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || ||||| Sbjct 231 GAGGGTCTTCACGAAGATTTG 251 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| |||||||| |||| ||||||||| | ||| || | ||| || |||| || Sbjct 279 GTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTGCGTCCGTCCTCCAATTG 338 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||||||||| | ||| || || || ||| ||| || || || || ||||| Sbjct 339 CTTACCGGCGAAGATCAAACGTTGTTGATCTGGAGGAATACCCTCCTTATCTTGGATCTT 398 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| || | ||| |||| | || || ||||| ||||| || || || || Sbjct 399 GGCCTTTACGTTCTCAATGGTATCTGAAGGCTCAACTTCCAAAGTGATGGTTTTGCCGGT 458 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| Sbjct 459 GAGGGTCTTTACGAAGATTTG 479 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||| || || ||||| || ||| | || ||| ||||||||||| |||| ||| Sbjct 125 ATCTTCGCCGGCAAACAATTGGAGGACGGACGTACCTTGTCCGATTACAACATCCAAAAA 66 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||||||||||||| | || ||| | || || Sbjct 65 GAGTCTACTCTTCACTTGGTATTGCGTCTCCG 34 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||| ||||| ||||| || ||| | || ||| |||| |||||| ||||||| Sbjct 353 ATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAACATCCAGAAG 294 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||||||||||||| | || ||| | || || Sbjct 293 GAGTCTACTCTTCACTTGGTATTGCGTCTCCG 262 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||| ||||| |||||||| ||| | || ||| ||||||||||| |||| || Sbjct 581 ATCTTCGCCGGTAAGCAATTGGAAGACGGACGTACCTTGTCCGATTACAACATCCAAAAG 522 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || |||||||||||| | || ||| | || || Sbjct 521 GAATCTACTCTTCACTTGGTATTGCGTCTCCG 490 >seq2732 Length=47336 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||| || || | || ||||||||||| || | |||||||||| ||||||||| Sbjct 1636 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTTCCG 1695 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || || || |||||||| || || || ||||||||| || ||||| || ||| Sbjct 1696 GCAAAAATTAGACGCTGTTGATCAGGCGGAATTCCTTCCTTATCTTGAATTTTGGCCTTA 1755 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||| | || || | | || || || | ||||| ||||||||||| || ||| Sbjct 1756 ACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTACCCGTAAGGGTT 1815 Query 199613 TTCACAAAAATTTG 199626 || || || ||||| Sbjct 1816 TTTACGAATATTTG 1829 >seq1128 Length=88325 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||| ||||| ||||| || | |||||||| | |||||| Sbjct 331 CGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTA 272 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || ||||| ||||||||||| | ||| || || || || ||||| Sbjct 271 CGTCCATCCTCAAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCC 212 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || || ||| || || || || | ||| || | | || || ||||| Sbjct 211 TCCTTATCTTGGAT-TTTGGCTTTGACATTCTCAATGGTATCCGAAGGCTCAACTTCCAA 153 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| ||||| || ||||| Sbjct 152 GGTGATTGTTTTGCCGGTGAGAGTCTTCACGAAGATTTG 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178438846341320