Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq291 343 2e-89 seq225 286 4e-72 >seq291 Length=196152 Score = 343 bits (380), Expect = 2e-89 Identities = 1209/1883 (64%), Gaps = 27/1883 (1%) Strand=Plus/Minus Query 46972 CTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATAC 47031 |||| ||||||||||| | || | ||| |||| ||| || || ||||||||||| | Sbjct 78050 CTTTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGC 77991 Query 47032 CAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAG 47091 ||||||| | |||| |||| || |||||||| ||| ||| | ||| ||| | | Sbjct 77990 CAGTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTATAGAAGTGAGCTTACCATAGTTGG 77931 Query 47092 GTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTG 47151 | || | | || || || | || ||||||||||| || |||||||| | ||| || | Sbjct 77930 GCTCAGCCACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCACGATCTGCAG 77871 Query 47152 CCATATCTAAAATAACCCTTTGTGGTA-TCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 |||| | | | | || || | ||||||| || ||||| || | | ||| Sbjct 77870 CCATTT-TGATCGATGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTATG 77812 Query 47211 TCTTCTGGGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgtttttt 47267 | | ||| | |||| | ||||||| || ||||| | | |||||| || || || Sbjct 77811 TGCTGTGGTATGGATTCAATATTTTGTATGGATCCGCGACTGGTTATAATATTATTCTTC 77752 Query 47268 aattcatttgaccaaagttttcgt-tcagtta-atgtttttaaAAGATGAGGATTAACAA 47325 | |||| ||| || | || |||| || | | ||| ||| |||| |||| Sbjct 77751 ATATCATCATCCCACAGNACCCAACTCGGTTAGATCGCGTAACAAG-TGATGATTTACAA 77693 Query 47326 TTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAG 47385 ||||||||| || || || || | ||| |||| ||||| || || ||||| | | Sbjct 77692 CTTGAAATTCACCCGAAAGCACACGACGTGTATAAATATTGGAAGTGTACGGTTCAAATG 77633 Query 47386 ATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGC 47445 | ||||| || || | |||||| || ||||| || || ||||||| |||| | || Sbjct 77632 ACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAG 77573 Query 47446 TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTG 47505 || | || |||| || | ||| | |||||| ||||||||| | Sbjct 77572 AGTTGCGGACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAG 77513 Query 47506 ATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTAT 47565 ||| || ||| | ||||| || ||||| || ||||| | || ||||| |||| Sbjct 77512 TTGGTGTTTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTTTAT 77453 Query 47566 ATGTTTTATAAGGACCGTATAGTTT--AGCGAGTTCACAACTTGCTTCCAATGCACTATA 47623 | |||| ||| | || ||||||| ||| | ||| ||||| |||||||| || | ||| Sbjct 77452 ACGTTTCATAGGTGCC--ATAGTTTTCAGCTAATTCGCAACTGGCTTCCAAGGCGCCATA 77395 Query 47624 ATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATA 47683 || || ||||| ||||||| || | | ||||||| ||| | || || Sbjct 77394 GTAAATAGTTTCGAATATTTGCTGATTCAAACGGAATGCTTCTTCACTTTCGTATGGGTA 77335 Query 47684 NNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGT 47743 || | || || || ||||| | ||||||||||| || | ||| | Sbjct 77334 ACGCATTAGAATTAAAGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGATGTCT 77275 Query 47744 TTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG 47803 ||| || | || || || || ||||| | || || ||||| |||||||| || Sbjct 77274 GAAATTCGATTTCCTTGCCTCCGGCAAGGGATAATGATTAATGTCTATGATTTTATTCAG 77215 Query 47804 ANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATT--- 47860 | | |||| | | ||||| ||| || | || | Sbjct 77214 ATTACGTGTAACGGTCTTTGTGACTTCTTTGAGGCGCTTAAAGTCATACGTTTTCTCGGG 77155 Query 47861 TATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATT 47920 | | |||||| |||| | || || || || | || || ||||||||||||| || Sbjct 77154 TGTGACAAACATATTCAAGGCGATCGAAGCCAAGTTGCACACAGCTACCTCATCGGGTGA 77095 Query 47921 AGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATG 47980 | ||||| | ||||| | ||||| ||||| ||| || || || || | ||| || || Sbjct 77094 CGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTG 77035 Query 47981 ATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTG 48040 |||| | ||||| || || || || | ||| | ||||| || || || | || Sbjct 77034 ATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTG 76975 Query 48041 AGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATC 48100 |||||||| || ||||| | | || ||||| | || || Sbjct 76974 CGATTCAATAATGCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCTTC 76915 Query 48101 ATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGG 48160 ||||| ||||| ||||||||| || || || || || | || | || ||| || || Sbjct 76914 CTGTTCATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACCGGG 76855 Query 48161 ACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATAT 48220 ||| | | |||||||| | ||||| || ||||| || ||| | ||||||||| Sbjct 76854 ACACTTGTGTGGACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCATAAATAG 76795 Query 48221 ATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTAT 48279 ||| |||||||| | || ||| || ||||| || | | | ||||| |||||| | | Sbjct 76794 ATCAGGTATCCATAAGGC-ATAGAACAAATCTCTGGCGCGATGCTCTTCTTTGCCAGTGT 76736 Query 48280 TCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCA 48339 | |||| | ||| | ||| || | |||||||||||||||||||| | || || || | Sbjct 76735 TTTTTTTCAATTCCAAAAATTCGAAAATATCAGCATGCCATGGTTCCAGGTAGATGGCAA 76676 Query 48340 TTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTC 48399 | |||||||||||| || |||||||| | ||| | || |||| || | |||| Sbjct 76675 AGGCGCCTGGTCGTTTACCGCCACCTTGATCCACATAGCGTGCTATATTATTGAACACTC 76616 Query 48400 TTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAG 48459 ||||| || || | |||||||||| | | ||| || ||| ||| | | || | | Sbjct 76615 GCAACATAGGCACCAAACCATTTGATGTGCTATTTGTACCCACAATTGCAGTGCCTTTTG 76556 Query 48460 CTCTTAT---AT-TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCA 48515 | | ||| || ||| || | ||| ||||| || || ||| || || | ||| Sbjct 76555 CACGTATGCAATGTAC--GTT--CAGACCAATACCGCCAGCAGATTTGGAAATCAATGCA 76500 Query 48516 CACCG-TTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574 || | | | | | | | |||| || || || ||| || | ||| | | |||||| Sbjct 76499 CATTGATGTGCAGATGTGA-AAATACCATCAATGGAATCGTCCACCATGGTCAGTAGAAA 76441 Query 48575 ACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAAT 48634 || |||| |||||| || ||| | | | || | |||||||| ||||| | Sbjct 76440 GCATGATGACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGTGT 76381 Query 48635 AAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATG 48694 ||| | || || | ||| || || ||||| || | | ||| || || ||| Sbjct 76380 AAAATAACGTTCGGAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTTCGCCATG 76321 Query 48695 TATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTAT 48754 |||||| || | |||||||||||||||| || |||| |||||||||||| || | Sbjct 76320 TATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCGTTCAA 76261 Query 48755 TTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTT 48814 ||| | | ||| || ||| | ||||||||||||||||| || || ||| ||| Sbjct 76260 TTTTAGCAAATAGGAACGTTCAAGCGTTTTAAAACCAAAATAATTATAACCAAAATCGCG 76201 Query 48815 ATCATTAATAATTGATGAATTTA 48837 ||| |||||| | || |||| Sbjct 76200 GGCATAAATAATGGCAGAGTTTA 76178 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 46972 CTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATAC 47031 |||| ||||||||||| | || | ||| |||| ||| || || ||||||||||| | Sbjct 85126 CTTTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGC 85067 Query 47032 CAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAG 47091 ||||||| | |||| |||| || |||||||| ||| ||| | ||| ||| | | Sbjct 85066 CAGTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTATAGAAGTGAGCTTACCATAGTTGG 85007 Query 47092 GTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTG 47151 | || | | || || || | || ||||||||||| || |||||||| | ||| || | Sbjct 85006 GCTCAGCCACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCACGATCTGCAG 84947 Query 47152 CCAT 47155 |||| Sbjct 84946 CCAT 84943 >seq225 Length=233467 Score = 286 bits (316), Expect = 4e-72 Identities = 485/700 (69%), Gaps = 2/700 (0%) Strand=Plus/Minus Query 18795 ATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAAC 18854 ||| || ||||||| ||||| | ||| | | |||||||| || ||||| || || Sbjct 26879 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 26820 Query 18855 AGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATAC 18914 || | || || || | ||||| || || || || || || || || || || || Sbjct 26819 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 26760 Query 18915 AACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACA 18974 || || || | | | || | || | ||||| |||||||||||||| || ||||| Sbjct 26759 AATTCGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCACA 26700 Query 18975 ATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCC 19034 ||| |||||||| |||| || | |||||| |||||||| || || ||||| | || Sbjct 26699 ATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAACC 26640 Query 19035 TCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGC 19094 | ||| || | |||||| || |||||||| ||| ||||| |||||||| || || Sbjct 26639 ACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTCAACGGC 26580 Query 19095 TGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGC 19154 ||||| |||| || | ||| ||| | | || || |||||| || || Sbjct 26579 AGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAGGAAATCCAAGCAAGCGC 26520 Query 19155 CCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACG 19214 |||||| ||||| ||||| |||||||||||||||| ||| |||| || | | Sbjct 26519 CCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGTAATTCCT 26460 Query 19215 CTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATT 19274 | | | || |||| ||||| ||| || |||| || |||||||| ||||| | ||| Sbjct 26459 TTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGCACATT 26400 Query 19275 TTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACA 19334 || || || || |||||||| || || || | ||| ||||| | || ||||| || Sbjct 26399 CTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCCTGGCA 26340 Query 19335 AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATAC 19394 || | ||| || | ||||||||| || || |||||| || || ||||| ||||| || Sbjct 26339 GAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCTAACAC 26280 Query 19395 ATGTTTAATAAAATGTTTTTCA-TCTGAGGTTAATGTATTCCAATCATTAATATCTTTAG 19453 ||| |||||||||| |||| | | || | | || |||||||| |||||||||| Sbjct 26279 GTGTGAAATAAAATGTCGTTCATTATCAGTTAGACGT-GCCCAATCATCCATATCTTTAG 26221 Query 19454 ATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 | | ||||||||| | |||||||| || || || ||||| Sbjct 26220 AAAGATCTACTTCCCCTACTGTCCAGAACGATGCTTCTGC 26181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561884237534400